Date: Sat, 8 Jun 2019 01:31:19 +0000 (UTC) From: Steve Wills <swills@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r503695 - in head/biology/tRNAscan-SE: . files Message-ID: <201906080131.x581VJMD024280@repo.freebsd.org>
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Author: swills Date: Sat Jun 8 01:31:18 2019 New Revision: 503695 URL: https://svnweb.freebsd.org/changeset/ports/503695 Log: biology/tRNAscan-SE: Update to 2.0.3 PR: 238253 Submitted by: Motomichi Matsuzaki <mzaki@niid.go.jp> Modified: head/biology/tRNAscan-SE/Makefile (contents, props changed) head/biology/tRNAscan-SE/distinfo (contents, props changed) head/biology/tRNAscan-SE/files/patch-tRNAscan-SE.src (contents, props changed) Modified: head/biology/tRNAscan-SE/Makefile ============================================================================== --- head/biology/tRNAscan-SE/Makefile Sat Jun 8 01:29:44 2019 (r503694) +++ head/biology/tRNAscan-SE/Makefile Sat Jun 8 01:31:18 2019 (r503695) @@ -2,10 +2,9 @@ # $FreeBSD$ PORTNAME= tRNAscan-SE -PORTVERSION= 2.0.0 -PORTREVISION= 1 +PORTVERSION= 2.0.3 CATEGORIES= biology -MASTER_SITES= http://lowelab.ucsc.edu/software/ +MASTER_SITES= http://trna.ucsc.edu/software/ DISTFILES= ${DISTNAME:tl}${EXTRACT_SUFX} MAINTAINER= mzaki@niid.go.jp @@ -16,7 +15,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING RUN_DEPENDS= cmsearch:biology/infernal -WRKSRC= ${WRKDIR}/${DISTNAME:S,.0$,,} +WRKSRC= ${WRKDIR}/${DISTNAME:C,\.[0-9]+$,,} GNU_CONFIGURE= yes Modified: head/biology/tRNAscan-SE/distinfo ============================================================================== --- head/biology/tRNAscan-SE/distinfo Sat Jun 8 01:29:44 2019 (r503694) +++ head/biology/tRNAscan-SE/distinfo Sat Jun 8 01:31:18 2019 (r503695) @@ -1,3 +1,3 @@ -TIMESTAMP = 1528270436 -SHA256 (trnascan-se-2.0.0.tar.gz) = 0dde1c07142e4bf77b21d53ddf3eeb1ef8c52248005a42323d13f8d7c798100c -SIZE (trnascan-se-2.0.0.tar.gz) = 4372755 +TIMESTAMP = 1557725777 +SHA256 (trnascan-se-2.0.3.tar.gz) = b305c1bf226d16833349b22ad1f3160a52ad30f577a336128da3cc76d5772a4e +SIZE (trnascan-se-2.0.3.tar.gz) = 4372985 Modified: head/biology/tRNAscan-SE/files/patch-tRNAscan-SE.src ============================================================================== --- head/biology/tRNAscan-SE/files/patch-tRNAscan-SE.src Sat Jun 8 01:29:44 2019 (r503694) +++ head/biology/tRNAscan-SE/files/patch-tRNAscan-SE.src Sat Jun 8 01:31:18 2019 (r503695) @@ -1,12 +1,6 @@ ---- tRNAscan-SE.src.orig 2017-12-03 01:59:25 UTC +--- tRNAscan-SE.src.orig 2019-04-30 21:37:37 UTC +++ tRNAscan-SE.src -@@ -1,4 +1,4 @@ --#! /usr/bin/perl -+#! @PERL@ - # - # -------------------------------------------------------------------- - # tRNAscan-SE: a program for improved detection of transfer RNA -@@ -44,7 +44,7 @@ our $release_date = "December 2017"; +@@ -44,7 +44,7 @@ our $release_date = "April 2019"; our $program_id = "tRNAscan-SE-".$version; # modified by 'make'
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