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Date:      Fri, 25 Dec 2015 12:30:50 +0000 (UTC)
From:      Carlo Strub <cs@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r404418 - in head/science/py-DendroPy: . files
Message-ID:  <201512251230.tBPCUoPc077310@repo.freebsd.org>

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Author: cs
Date: Fri Dec 25 12:30:50 2015
New Revision: 404418
URL: https://svnweb.freebsd.org/changeset/ports/404418

Log:
  Update to 4.0.3

Deleted:
  head/science/py-DendroPy/files/
Modified:
  head/science/py-DendroPy/Makefile
  head/science/py-DendroPy/distinfo
  head/science/py-DendroPy/pkg-plist

Modified: head/science/py-DendroPy/Makefile
==============================================================================
--- head/science/py-DendroPy/Makefile	Fri Dec 25 12:16:41 2015	(r404417)
+++ head/science/py-DendroPy/Makefile	Fri Dec 25 12:30:50 2015	(r404418)
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	DendroPy
-PORTVERSION=	3.12.0
-PORTREVISION=	1
+PORTVERSION=	4.0.3
 CATEGORIES=	science python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

Modified: head/science/py-DendroPy/distinfo
==============================================================================
--- head/science/py-DendroPy/distinfo	Fri Dec 25 12:16:41 2015	(r404417)
+++ head/science/py-DendroPy/distinfo	Fri Dec 25 12:30:50 2015	(r404418)
@@ -1,2 +1,2 @@
-SHA256 (DendroPy-3.12.0.tar.gz) = 38a0f36f2f7aae43ec5599408b0d0a4c80996b749589f025940d955a70fc82d4
-SIZE (DendroPy-3.12.0.tar.gz) = 6631147
+SHA256 (DendroPy-4.0.3.tar.gz) = a2c074eb91e2866120521c076587983900c5b312879832c3559effb730bd4465
+SIZE (DendroPy-4.0.3.tar.gz) = 16330973

Modified: head/science/py-DendroPy/pkg-plist
==============================================================================
--- head/science/py-DendroPy/pkg-plist	Fri Dec 25 12:16:41 2015	(r404417)
+++ head/science/py-DendroPy/pkg-plist	Fri Dec 25 12:30:50 2015	(r404418)
@@ -1,77 +1,118 @@
-bin/cattrees.py
-bin/long_branch_symmdiff.py
-bin/strict_consensus_merge.py
-bin/sumlabels.py
 bin/sumtrees.py
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-%%PYTHON_SITELIBDIR%%/dendropy/coalescent.py
-%%PYTHON_SITELIBDIR%%/dendropy/coalescent.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/coalescent.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/continuous.py
-%%PYTHON_SITELIBDIR%%/dendropy/continuous.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/continuous.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/__main__.py
+%%PYTHON_SITELIBDIR%%/dendropy/__main__.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/__main__.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.py
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.py
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.py
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.py
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.py
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.py
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.py
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.py
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.py
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.pyo
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+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.py
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.py
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.py
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.py
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.py
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.py
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.py
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.py
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.pyo
 %%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.py
 %%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyc
 %%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyo
@@ -96,55 +137,138 @@ bin/sumtrees.py
 %%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.py
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-%%PYTHON_SITELIBDIR%%/dendropy/interop/ncbi.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/ncbi.pyo
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 %%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.pyo
+%%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.py
+%%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.pyc
+%%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.pyo
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+%%PYTHON_SITELIBDIR%%/dendropy/legacy/__init__.py
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+%%PYTHON_SITELIBDIR%%/dendropy/legacy/__init__.pyo
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@@ -166,6 +291,7 @@ bin/sumtrees.py
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@@ -204,8 +683,12 @@ bin/sumtrees.py
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