Date: Tue, 22 Aug 2017 06:12:29 GMT From: pkg-fallout@FreeBSD.org To: tota@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [exp - 103i386-default-build-as-user][math/R-cran-nloptr] Failed for R-cran-nloptr-1.0.4_1 in stage Message-ID: <201708220612.v7M6CTl1080348@package19.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Last committer: dbn@FreeBSD.org Ident: $FreeBSD: head/math/R-cran-nloptr/Makefile 443845 2017-06-18 18:09:16Z dbn $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/448504/logs/R-cran-nloptr-1.0.4_1.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=448504 Log: ====>> Building math/R-cran-nloptr build started at Tue Aug 22 06:11:36 UTC 2017 port directory: /usr/ports/math/R-cran-nloptr building for: FreeBSD 103i386-default-build-as-user-job-02 10.3-RELEASE-p21 FreeBSD 10.3-RELEASE-p21 i386 maintained by: tota@FreeBSD.org Makefile ident: $FreeBSD: head/math/R-cran-nloptr/Makefile 443845 2017-06-18 18:09:16Z dbn $ Poudriere version: 3.1.19-61-ga8829ba9 Host OSVERSION: 1200040 Jail OSVERSION: 1003000 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1003000 UNAME_v=FreeBSD 10.3-RELEASE-p21 UNAME_r=10.3-RELEASE-p21 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-nloptr-1.0.4_1 OLDPWD=/ PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-61-ga8829ba9 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh GID=0 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-nloptr/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-nloptr/work HOME=/wrkdirs/usr/ports/math/R-cran-nloptr/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-nloptr/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-nloptr/work HOME=/wrkdirs/usr/ports/math/R-cran-nloptr/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -f stack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/nloptr OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/nloptr" EXAMPLESDIR="share/examples/nloptr" DATADIR="share/nloptr" WWWDIR="www/nloptr" ETCDIR="etc/nloptr" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/nloptr DOCSDIR=/usr/local/share/doc/nloptr EXAMPLESDIR=/usr/local/share/examples/nloptr WWWDIR=/usr/local/www/nloptr ETCDIR=/usr/local/etc/nloptr --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=i386 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=10.3 OSVERSION=1003000 PYTHONBASE=/usr/local _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=10.3-RELEASE-p21 #### Misc Poudriere #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited sbsize (bytes, -b) unlimited pseudo-terminals (-p) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License LGPL3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-nloptr-1.0.4_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [103i386-default-build-as-user-job-02] Installing pkg-1.10.1... [103i386-default-build-as-user-job-02] Extracting pkg-1.10.1: .......... done ===> R-cran-nloptr-1.0.4_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-nloptr-1.0.4_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by R-cran-nloptr-1.0.4_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by R-cran-nloptr-1.0.4_1 for building => SHA256 Checksum OK for nloptr_1.0.4.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by R-cran-nloptr-1.0.4_1 for building ===> Extracting for R-cran-nloptr-1.0.4_1 => SHA256 Checksum OK for nloptr_1.0.4.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-nloptr-1.0.4_1 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-nloptr-1.0.4_1 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.4.1_4.txz [103i386-default-build-as-user-job-02] Installing R-3.4.1_4... [103i386-default-build-as-user-job-02] `-- Installing cairo-1.14.8_1,2... [103i386-default-build-as-user-job-02] | `-- Installing dri2proto-2.8... [103i386-default-build-as-user-job-02] | `-- Extracting dri2proto-2.8: .... done [103i386-default-build-as-user-job-02] | `-- Installing fontconfig-2.12.1,1... [103i386-default-build-as-user-job-02] | | `-- Installing expat-2.2.1... [103i386-default-build-as-user-job-02] | | `-- Extracting expat-2.2.1: .......... done [103i386-default-build-as-user-job-02] | | `-- Installing freetype2-2.8... [103i386-default-build-as-user-job-02] | | `-- Extracting freetype2-2.8: .......... done [103i386-default-build-as-user-job-02] | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded [103i386-default-build-as-user-job-02] | `-- Installing gettext-runtime-0.19.8.1_1... [103i386-default-build-as-user-job-02] | | `-- Installing indexinfo-0.2.6... [103i386-default-build-as-user-job-02] | | `-- Extracting indexinfo-0.2.6: .... done [103i386-default-build-as-user-job-02] | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [103i386-default-build-as-user-job-02] | `-- Installing glib-2.50.2_4,1... [103i386-default-build-as-user-job-02] | | `-- Installing libffi-3.2.1... [103i386-default-build-as-user-job-02] | | `-- Extracting libffi-3.2.1: .......... done [103i386-default-build-as-user-job-02] | | `-- Installing libiconv-1.14_10... [103i386-default-build-as-user-job-02] | | `-- Extracting libiconv-1.14_10: .......... done [103i386-default-build-as-user-job-02] | | `-- Installing pcre-8.40_1... [103i386-default-build-as-user-job-02] | | `-- Extracting pcre-8.40_1: .......... done [103i386-default-build-as-user-job-02] | | `-- Installing perl5-5.24.2... [103i386-default-build-as-user-job-02] | | `-- Extracting perl5-5.24.2: .......... done [103i386-default-build-as-user-job-02] | | `-- Installing python27-2.7.13_7... [103i386-default-build-as-user-job-02] | | `-- Installing readline-7.0.3... <snip> sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from ca_root_nss-3.32: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc5-5.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from trousers-0.3.14_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from R-3.4.1_4: ======================================================================== On 11.1 and later, there is a problem downloading R packages when gfortran is chosen as the fortran compiler. Use either of these workarounds until a permanent solution is found. 1. If you are on an amd64 system, you can use flang as the fortran compiler. 2. If you choose gfortran as the fortran compiler, you can add options(download.file.method="wget") to ~/.Rprofile followed by a newline. Details: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=221127 ======================================================================== ===> R-cran-nloptr-1.0.4_1 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-nloptr-1.0.4_1 ===> R-cran-nloptr-1.0.4_1 depends on executable: gfortran5 - found ===> R-cran-nloptr-1.0.4_1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.3.7,1.txz [103i386-default-build-as-user-job-02] Installing pkgconf-1.3.7,1... [103i386-default-build-as-user-job-02] Extracting pkgconf-1.3.7,1: .......... done ===> R-cran-nloptr-1.0.4_1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of R-cran-nloptr-1.0.4_1 ===> R-cran-nloptr-1.0.4_1 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> R-cran-nloptr-1.0.4_1 depends on shared library: libnlopt.so - not found ===> Installing existing package /packages/All/nlopt-2.4.2_1.txz [103i386-default-build-as-user-job-02] Installing nlopt-2.4.2_1... [103i386-default-build-as-user-job-02] `-- Installing guile2-2.0.14_1... [103i386-default-build-as-user-job-02] | `-- Installing boehm-gc-threaded-7.6.0_1... [103i386-default-build-as-user-job-02] | | `-- Installing boehm-gc-7.6.0... [103i386-default-build-as-user-job-02] | | `-- Extracting boehm-gc-7.6.0: .......... done [103i386-default-build-as-user-job-02] | `-- Extracting boehm-gc-threaded-7.6.0_1: .......... done [103i386-default-build-as-user-job-02] | `-- Installing libltdl-2.4.6... [103i386-default-build-as-user-job-02] | `-- Extracting libltdl-2.4.6: .......... done [103i386-default-build-as-user-job-02] `-- Extracting guile2-2.0.14_1: .......... done [103i386-default-build-as-user-job-02] `-- Installing py27-numpy-1.13.1_1,1... [103i386-default-build-as-user-job-02] | `-- Installing blas-3.5.0_3... [103i386-default-build-as-user-job-02] | `-- Extracting blas-3.5.0_3: ....... done [103i386-default-build-as-user-job-02] | `-- Installing cblas-1.0_6... [103i386-default-build-as-user-job-02] | `-- Extracting cblas-1.0_6: ......... done [103i386-default-build-as-user-job-02] | `-- Installing lapack-3.5.0_2... [103i386-default-build-as-user-job-02] | `-- Extracting lapack-3.5.0_2: .......... done [103i386-default-build-as-user-job-02] | `-- Installing py27-setuptools-36.2.2... [103i386-default-build-as-user-job-02] | `-- Extracting py27-setuptools-36.2.2: .......... done [103i386-default-build-as-user-job-02] | `-- Installing suitesparse-4.0.2_6... [103i386-default-build-as-user-job-02] | | `-- Installing openblas-0.2.19_1,1... [103i386-default-build-as-user-job-02] | | `-- Extracting openblas-0.2.19_1,1: ......... done [103i386-default-build-as-user-job-02] | `-- Extracting suitesparse-4.0.2_6: .......... done [103i386-default-build-as-user-job-02] `-- Extracting py27-numpy-1.13.1_1,1: .......... done [103i386-default-build-as-user-job-02] Extracting nlopt-2.4.2_1: .......... done Message from cblas-1.0_6: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> R-cran-nloptr-1.0.4_1 depends on shared library: libnlopt.so - found (/usr/local/lib/libnlopt.so) ===> Returning to build of R-cran-nloptr-1.0.4_1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-nloptr-1.0.4_1 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-nloptr-1.0.4_1 depends on file: /usr/local/bin/R - found ===> R-cran-nloptr-1.0.4_1 depends on executable: gfortran5 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-nloptr-1.0.4_1 ===> Generating temporary packing list * installing *source* package 'nloptr' ... file 'configure' has the wrong MD5 checksum checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking how to run the C++ preprocessor... c++ -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking for pkg-config... yes configure: Now testing for NLopt header file. checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking nlopt.h usability... yes checking nlopt.h presence... yes checking for nlopt.h... yes configure: Suitable NLopt library found. configure: creating ./config.status config.status: creating src/Makevars ** libs gmake[1]: Entering directory '/wrkdirs/usr/ports/math/R-cran-nloptr/work/nloptr/src' /usr/local/bin/clang++40 -I/usr/local/lib/R/include -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c dummy.cpp -o dummy.o gmake[1]: /usr/local/bin/clang++40: Command not found gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:166: dummy.o] Error 127 gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/R-cran-nloptr/work/nloptr/src' ERROR: compilation failed for package 'nloptr' * removing '/wrkdirs/usr/ports/math/R-cran-nloptr/work/stage/usr/local/lib/R/library/nloptr' *** Error code 1 Stop. make: stopped in /usr/ports/math/R-cran-nloptr
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