Date: Fri, 8 May 2015 18:12:37 +0000 (UTC) From: Adam Weinberger <adamw@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r385811 - in head/biology: p5-AcePerl p5-AcePerl/files p5-Bio-ASN1-EntrezGene p5-bioperl Message-ID: <201505081812.t48ICboj017260@svn.freebsd.org>
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Author: adamw Date: Fri May 8 18:12:36 2015 New Revision: 385811 URL: https://svnweb.freebsd.org/changeset/ports/385811 Log: Reassign biology/ perl modules to perl@. While here: Regenerate p5-AcePerl's patches using makepatch. Make p5-Bio-ASN1-EntrezGene depend on p5-bioperl, instead of the other way around. Bump PORTREVISION on those two ports. Modified: head/biology/p5-AcePerl/Makefile head/biology/p5-AcePerl/files/patch-Makefile.PL head/biology/p5-AcePerl/files/patch-RPC__RPC.xs head/biology/p5-AcePerl/files/patch-acelib_memsubs.c head/biology/p5-AcePerl/files/patch-acelib_wh_mydirent.h head/biology/p5-AcePerl/files/patch-acelib_wh_mystdlib.h head/biology/p5-Bio-ASN1-EntrezGene/Makefile head/biology/p5-bioperl/Makefile Modified: head/biology/p5-AcePerl/Makefile ============================================================================== --- head/biology/p5-AcePerl/Makefile Fri May 8 18:03:24 2015 (r385810) +++ head/biology/p5-AcePerl/Makefile Fri May 8 18:12:36 2015 (r385811) @@ -8,7 +8,7 @@ CATEGORIES= biology databases perl5 MASTER_SITES= CPAN/Ace PKGNAMEPREFIX= p5- -MAINTAINER= ports@FreeBSD.org +MAINTAINER= perl@FreeBSD.org COMMENT= Perl5 interface to the ACEDB genome database system LICENSE= ART10 GPLv1 Modified: head/biology/p5-AcePerl/files/patch-Makefile.PL ============================================================================== --- head/biology/p5-AcePerl/files/patch-Makefile.PL Fri May 8 18:03:24 2015 (r385810) +++ head/biology/p5-AcePerl/files/patch-Makefile.PL Fri May 8 18:12:36 2015 (r385811) @@ -1,20 +1,20 @@ ---- Makefile.PL.orig Fri Sep 28 16:13:04 2001 -+++ Makefile.PL Fri Jan 25 14:11:26 2002 -@@ -2,7 +2,7 @@ - use ExtUtils::MakeMaker qw(prompt WriteMakefile); +--- Makefile.PL.orig 2006-01-04 15:18:10 UTC ++++ Makefile.PL +@@ -3,7 +3,7 @@ use ExtUtils::MakeMaker qw(prompt WriteM use File::Path; + require 5.8.0; -my $choice; +my $choice = 3; while (!$choice) { $reply = prompt( "\nWhat do you want to build?\n\n" . -@@ -22,8 +22,6 @@ +@@ -23,8 +23,6 @@ my @extlib = (); push @extlib,'Freesubs' if $choice >= 2; push @extlib,'RPC' if $choice >= 3; -print "\n"; -setup_sitedefs() if prompt("Do you want to install Ace::Browser? ","n") =~ /[yY]/; - my $headers = "./ace/wh"; + my $headers = "./acelib/wh"; WriteMakefile( Modified: head/biology/p5-AcePerl/files/patch-RPC__RPC.xs ============================================================================== --- head/biology/p5-AcePerl/files/patch-RPC__RPC.xs Fri May 8 18:03:24 2015 (r385810) +++ head/biology/p5-AcePerl/files/patch-RPC__RPC.xs Fri May 8 18:12:36 2015 (r385811) @@ -1,6 +1,6 @@ ---- ./RPC/RPC.xs.orig 2014-08-21 20:31:10.000000000 -0400 -+++ ./RPC/RPC.xs 2014-08-21 20:31:34.000000000 -0400 -@@ -153,7 +153,7 @@ +--- RPC/RPC.xs.orig 2000-06-13 17:17:19 UTC ++++ RPC/RPC.xs +@@ -153,7 +153,7 @@ int arg; break; case '_': if (strEQ(name, "_ACECLIENT_")) Modified: head/biology/p5-AcePerl/files/patch-acelib_memsubs.c ============================================================================== --- head/biology/p5-AcePerl/files/patch-acelib_memsubs.c Fri May 8 18:03:24 2015 (r385810) +++ head/biology/p5-AcePerl/files/patch-acelib_memsubs.c Fri May 8 18:12:36 2015 (r385811) @@ -1,5 +1,5 @@ ---- acelib/memsubs.c.orig Mon Jan 11 02:01:29 1999 -+++ acelib/memsubs.c Thu Jul 27 17:18:45 2000 +--- acelib/memsubs.c.orig 2002-11-24 19:24:23 UTC ++++ acelib/memsubs.c @@ -21,7 +21,7 @@ #if defined(NEXT) || defined(HP) || defined(MACINTOSH) extern void* malloc(mysize_t size) ; Modified: head/biology/p5-AcePerl/files/patch-acelib_wh_mydirent.h ============================================================================== --- head/biology/p5-AcePerl/files/patch-acelib_wh_mydirent.h Fri May 8 18:03:24 2015 (r385810) +++ head/biology/p5-AcePerl/files/patch-acelib_wh_mydirent.h Fri May 8 18:12:36 2015 (r385811) @@ -1,5 +1,5 @@ ---- acelib/wh/mydirent.h.orig Mon Jul 16 23:04:45 2001 -+++ acelib/wh/mydirent.h Mon Aug 13 12:41:59 2001 +--- acelib/wh/mydirent.h.orig 2002-11-14 20:00:06 UTC ++++ acelib/wh/mydirent.h @@ -55,7 +55,7 @@ extern char *getwd(char *pathname) ; #endif /* HP || SOLARIS || WIN32 */ Modified: head/biology/p5-AcePerl/files/patch-acelib_wh_mystdlib.h ============================================================================== --- head/biology/p5-AcePerl/files/patch-acelib_wh_mystdlib.h Fri May 8 18:03:24 2015 (r385810) +++ head/biology/p5-AcePerl/files/patch-acelib_wh_mystdlib.h Fri May 8 18:12:36 2015 (r385811) @@ -1,6 +1,6 @@ ---- acelib/wh/mystdlib.h.orig Mon Jul 16 23:04:45 2001 -+++ acelib/wh/mystdlib.h Mon Aug 13 12:42:25 2001 -@@ -161,7 +161,8 @@ +--- acelib/wh/mystdlib.h.orig 2002-11-14 20:00:06 UTC ++++ acelib/wh/mystdlib.h +@@ -161,7 +161,8 @@ char *DosToPosix(char *path) ; /* define #endif #if defined(POSIX) || defined(LINUX) || defined(SOLARIS) || defined(SGI) || \ Modified: head/biology/p5-Bio-ASN1-EntrezGene/Makefile ============================================================================== --- head/biology/p5-Bio-ASN1-EntrezGene/Makefile Fri May 8 18:03:24 2015 (r385810) +++ head/biology/p5-Bio-ASN1-EntrezGene/Makefile Fri May 8 18:12:36 2015 (r385811) @@ -3,16 +3,18 @@ PORTNAME= Bio-ASN1-EntrezGene PORTVERSION= 1.70 +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CJFIELDS PKGNAMEPREFIX= p5- -MAINTAINER= ports@FreeBSD.org +MAINTAINER= perl@FreeBSD.org COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene -WRKSRC= ${WRKDIR}/Bio-ASN1-EntrezGene-${PORTVERSION} +BUILD_DEPENDS= p5-bioperl>=0:${PORTSDIR}/biology/p5-bioperl +RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 USE_PERL5= configure Modified: head/biology/p5-bioperl/Makefile ============================================================================== --- head/biology/p5-bioperl/Makefile Fri May 8 18:03:24 2015 (r385810) +++ head/biology/p5-bioperl/Makefile Fri May 8 18:12:36 2015 (r385811) @@ -3,7 +3,7 @@ PORTNAME= bioperl PORTVERSION= 1.6.924 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CJFIELDS @@ -18,7 +18,6 @@ LICENSE_COMB= dual BUILD_DEPENDS= p5-Algorithm-Munkres>=0:${PORTSDIR}/math/p5-Algorithm-Munkres \ p5-Array-Compare>=0:${PORTSDIR}/misc/p5-Array-Compare \ - p5-Bio-ASN1-EntrezGene>=0:${PORTSDIR}/biology/p5-Bio-ASN1-EntrezGene \ p5-Class-AutoClass>=0:${PORTSDIR}/devel/p5-Class-AutoClass \ p5-Clone>=0:${PORTSDIR}/devel/p5-Clone \ p5-Convert-Binary-C>=0:${PORTSDIR}/converters/p5-Convert-Binary-C \
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