Date: Sat, 7 Jul 2018 23:32:57 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r474143 - in head/science: . mmdb2 Message-ID: <201807072332.w67NWv7a043202@repo.freebsd.org>
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Author: yuri Date: Sat Jul 7 23:32:57 2018 New Revision: 474143 URL: https://svnweb.freebsd.org/changeset/ports/474143 Log: New port: science/mmdb2: C++ toolkit for working with macromolecular coordinate files Added: head/science/mmdb2/ head/science/mmdb2/Makefile (contents, props changed) head/science/mmdb2/distinfo (contents, props changed) head/science/mmdb2/pkg-descr (contents, props changed) head/science/mmdb2/pkg-plist (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Sat Jul 7 22:41:39 2018 (r474142) +++ head/science/Makefile Sat Jul 7 23:32:57 2018 (r474143) @@ -115,6 +115,7 @@ SUBDIR += metaf2xml SUBDIR += metaphysicl SUBDIR += minc2 + SUBDIR += mmdb2 SUBDIR += mol2ps SUBDIR += mpb SUBDIR += mpqc Added: head/science/mmdb2/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/mmdb2/Makefile Sat Jul 7 23:32:57 2018 (r474143) @@ -0,0 +1,21 @@ +# $FreeBSD$ + +PORTNAME= mmdb2 +DISTVERSION= 2.0.12 +CATEGORIES= science +MASTER_SITES= https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/ + +MAINTAINER= yuri@FreeBSD.org +COMMENT= C++ toolkit for working with macromolecular coordinate files + +LICENSE= GPLv3 LGPL3 +LICENSE_COMB= dual +LICENSE_FILE_GPLv3= ${WRKSRC}/COPYING +LICENSE_FILE_LGPL3= ${WRKSRC}/COPYING.LESSER + +USES= gmake libtool +GNU_CONFIGURE= yes +CONFIGURE_ARGS= --enable-shared --disable-static +USE_LDCONFIG= yes + +.include <bsd.port.mk> Added: head/science/mmdb2/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/mmdb2/distinfo Sat Jul 7 23:32:57 2018 (r474143) @@ -0,0 +1,3 @@ +TIMESTAMP = 1531005594 +SHA256 (mmdb2-2.0.12.tar.gz) = a24fca06266c6b4db06ad1e0e0ddf5037f2ea624347ab119a6b163d8929c62a0 +SIZE (mmdb2-2.0.12.tar.gz) = 723975 Added: head/science/mmdb2/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/mmdb2/pkg-descr Sat Jul 7 23:32:57 2018 (r474143) @@ -0,0 +1,15 @@ +MMDB is designed to assist developers in working with macromolecular coordinate +files. The library handles both PDB and mmCIF format files. + +The Library also features an internal binary format, portable between different +platforms. This is achieved at uniformity of the Library's interface functions, +so that there is no difference in handling different formats. + +MMDB provides various high-level tools for working with coordinate files, +including reading and writing, orthogonal-fractional transforms, generation of +symmetry mates, editing the molecular structure and more. + +MMDB is written by Eugene Krissinel, and is distributed as a part of the CCP4 +suite. This project maintains a current stand-alone version of the library. + +WWW: https://launchpad.net/mmd Added: head/science/mmdb2/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/mmdb2/pkg-plist Sat Jul 7 23:32:57 2018 (r474143) @@ -0,0 +1,38 @@ +include/mmdb2/hybrid_36.h +include/mmdb2/mmdb_atom.h +include/mmdb2/mmdb_bondmngr.h +include/mmdb2/mmdb_chain.h +include/mmdb2/mmdb_cifdefs.h +include/mmdb2/mmdb_coormngr.h +include/mmdb2/mmdb_cryst.h +include/mmdb2/mmdb_defs.h +include/mmdb2/mmdb_ficif.h +include/mmdb2/mmdb_io_file.h +include/mmdb2/mmdb_io_stream.h +include/mmdb2/mmdb_machine_.h +include/mmdb2/mmdb_manager.h +include/mmdb2/mmdb_mask.h +include/mmdb2/mmdb_math_.h +include/mmdb2/mmdb_math_align.h +include/mmdb2/mmdb_math_bfgsmin.h +include/mmdb2/mmdb_math_fft.h +include/mmdb2/mmdb_math_graph.h +include/mmdb2/mmdb_math_linalg.h +include/mmdb2/mmdb_math_rand.h +include/mmdb2/mmdb_mattype.h +include/mmdb2/mmdb_mmcif_.h +include/mmdb2/mmdb_model.h +include/mmdb2/mmdb_root.h +include/mmdb2/mmdb_rwbrook.h +include/mmdb2/mmdb_selmngr.h +include/mmdb2/mmdb_seqsuperpose.h +include/mmdb2/mmdb_symop.h +include/mmdb2/mmdb_tables.h +include/mmdb2/mmdb_title.h +include/mmdb2/mmdb_uddata.h +include/mmdb2/mmdb_utils.h +include/mmdb2/mmdb_xml_.h +lib/libmmdb2.so +lib/libmmdb2.so.0 +lib/libmmdb2.so.0.0.0 +libdata/pkgconfig/mmdb2.pc
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