Date: Sun, 14 Apr 2019 19:49:49 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-powerpc64-default][biology/exonerate] Failed for exonerate-2.4.0 in build Message-ID: <201904141949.x3EJnnCN007661@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mzaki@niid.go.jp Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/biology/exonerate/Makefile 474558 2018-07-13 07:02:16Z yuri $ Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p498785_s346161/logs/exonerate-2.4.0.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p498785_s346161 Log: =>> Building biology/exonerate build started at Sun Apr 14 19:14:47 UTC 2019 port directory: /usr/ports/biology/exonerate package name: exonerate-2.4.0 building for: FreeBSD head-powerpc64-default-job-11 13.0-CURRENT FreeBSD 13.0-CURRENT 1300018 powerpc maintained by: mzaki@niid.go.jp Makefile ident: $FreeBSD: head/biology/exonerate/Makefile 474558 2018-07-13 07:02:16Z yuri $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300012 Jail OSVERSION: 1300018 Job Id: 11 !!! Jail is newer than host. (Jail: 1300018, Host: 1300012) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300018 UNAME_v=FreeBSD 13.0-CURRENT 1300018 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- mzaki@niid.go.jp --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/exonerate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/exonerate/work HOME=/wrkdirs/usr/ports/biology/exonerate/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/exonerate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/exonerate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/exonerate/work HOME=/wrkdirs/usr/ports/biology/exonerate/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/exonerate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/exonerate" EXAMPLESDIR="share/examples/exonerate" DATADIR="share/exonerate" WWWDIR="www/exonerate" ETCDIR="etc/exonerate" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/exonerate DOCSDIR=/usr/local/share/doc/exonerate EXAMPLESDIR=/usr/local/share/examples/exonerate WWWDIR=/usr/local/www/exonerate ETCDIR=/usr/local/etc/exonerate --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300018 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> exonerate-2.4.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-powerpc64-default-job-11] Installing pkg-1.10.5_5... [head-powerpc64-default-job-11] Extracting pkg-1.10.5_5: .......... done ===> exonerate-2.4.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of exonerate-2.4.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by exonerate-2.4.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by exonerate-2.4.0 for building => SHA256 Checksum OK for exonerate-2.4.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by exonerate-2.4.0 for building ===> Extracting for exonerate-2.4.0 => SHA256 Checksum OK for exonerate-2.4.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for exonerate-2.4.0 =========================================================================== =======================<phase: build-depends >============================ ===> exonerate-2.4.0 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.6.0,1.txz [head-powerpc64-default-job-11] Installing pkgconf-1.6.0,1... [head-powerpc64-default-job-11] Extracting pkgconf-1.6.0,1: .......... done ===> exonerate-2.4.0 depends on package: pkgconf>=1.3.0_1 - found <snip> ** Message: 19:38:09.036: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_score.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_4 5_freebsd13_46_0/optimal_58_coding2coding_32_find_32_score.c ** Message: 19:38:12.848: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_path.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45 _freebsd13_46_0/optimal_58_coding2coding_32_find_32_path.c ** Message: 19:38:19.694: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_region.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_ 45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_region.c ** Message: 19:38:25.243: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_checkpoint.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_port bld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_checkpoint.c ** Message: 19:38:41.495: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc 64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.c ** Message: 19:39:06.258: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_score.o] ** Message: 19:39:06.259: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_score.o ** Message: 19:39:06.458: Adding function [optimal_58_coding2coding_32_find_32_score] ** Message: 19:39:06.459: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_path.o] ** Message: 19:39:06.465: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_path.o ** Message: 19:39:06.681: Adding function [optimal_58_coding2coding_32_find_32_path] ** Message: 19:39:06.682: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_region.o] ** Message: 19:39:06.682: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_region.o ** Message: 19:39:06.861: Adding function [optimal_58_coding2coding_32_find_32_region] ** Message: 19:39:06.862: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_checkpoint.o] ** Message: 19:39:06.863: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_checkpoint.o ** Message: 19:39:07.112: Adding function [optimal_58_coding2coding_32_find_32_checkpoint] ** Message: 19:39:07.139: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.o] ** Message: 19:39:07.145: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.o ** Message: 19:39:07.370: Adding function [optimal_58_coding2coding_32_find_32_path_32_continuation] ** Message: 19:39:07.438: Process optimal [Terminal [Segment("START"->"match"):[coding2coding]]] ** Message: 19:39:07.485: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /wrkdirs/usr/ports /biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: 19:39:23.559: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /wrkdirs/usr/ports/ biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: 19:39:55.889: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: 19:39:55.889: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: 19:39:56.095: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: 19:39:56.096: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: 19:39:56.096: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: 19:39:56.307: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: 19:39:56.307: Process optimal [Terminal [Segment("match"->"END"):[coding2coding]]] ** Message: 19:39:56.328: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /wrkdirs/usr/ports/b iology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: 19:40:02.432: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /wrkdirs/usr/ports/bi ology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: 19:40:13.116: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: 19:40:13.117: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: 19:40:13.313: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: 19:40:13.313: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: 19:40:13.314: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: 19:40:13.497: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: 19:40:13.498: Process optimal [HeuristicJoin:[Segment("match"->"match"):[coding2coding]]] ** Message: 19:40:13.570: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /wrkdirs/usr/ ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: 19:40:35.502: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /wrkdirs/usr/p orts/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: 19:41:13.996: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: 19:41:13.997: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: 19:41:14.174: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: 19:41:14.175: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: 19:41:14.176: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: 19:41:14.362: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: 19:41:14.369: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/c odegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.c ** Message: 19:41:15.560: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/c odegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.c ** Message: 19:41:16.933: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] ** Message: 19:41:16.933: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o ** Message: 19:41:17.159: Adding function [Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded] ** Message: 19:41:17.160: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] ** Message: 19:41:17.160: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o ** Message: 19:41:17.378: Adding function [Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded] ** Message: 19:41:17.380: Processing model [c2g] ** Message: 19:41:17.389: Bootstrapper processing model [coding2genome] ** Message: 19:41:17.389: Process optimal [optimal:coding2genome] ** Message: 19:41:17.425: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_score.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_4 5_freebsd13_46_0/optimal_58_coding2genome_32_find_32_score.c ** Message: 19:41:27.253: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_path.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45 _freebsd13_46_0/optimal_58_coding2genome_32_find_32_path.c ** Message: 19:41:43.457: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_region.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_ 45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_region.c ** Message: 19:41:56.239: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_checkpoint.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_port bld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_checkpoint.c ** Message: 19:42:36.005: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc 64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.c ** Message: 19:43:31.571: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_score.o] ** Message: 19:43:31.572: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_score.o ** Message: 19:43:31.784: Adding function [optimal_58_coding2genome_32_find_32_score] ** Message: 19:43:31.785: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_path.o] ** Message: 19:43:31.785: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_path.o ** Message: 19:43:31.997: Adding function [optimal_58_coding2genome_32_find_32_path] ** Message: 19:43:31.997: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_region.o] ** Message: 19:43:31.998: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_region.o ** Message: 19:43:32.215: Adding function [optimal_58_coding2genome_32_find_32_region] ** Message: 19:43:32.216: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_checkpoint.o] ** Message: 19:43:32.216: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_checkpoint.o ** Message: 19:43:32.418: Adding function [optimal_58_coding2genome_32_find_32_checkpoint] ** Message: 19:43:32.419: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.o] ** Message: 19:43:32.419: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.o ** Message: 19:43:32.658: Adding function [optimal_58_coding2genome_32_find_32_path_32_continuation] ** Message: 19:43:32.665: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4 .0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c ** Message: 19:43:34.761: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0 /codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.c ** Message: 19:43:36.991: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: 19:43:36.992: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o ** Message: 19:43:37.217: Adding function [Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary] ** Message: 19:43:37.218: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] ** Message: 19:43:37.218: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o ** Message: 19:43:37.445: Adding function [Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary] ** Message: 19:43:37.446: Processing model [cd2g] ** Message: 19:43:37.458: Bootstrapper processing model [cdna2genome] ** Message: 19:43:37.459: Process optimal [optimal:cdna2genome] ** Message: 19:43:37.525: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_score.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_ freebsd13_46_0/optimal_58_cdna2genome_32_find_32_score.c ** Message: 19:44:04.138: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_path.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_f reebsd13_46_0/optimal_58_cdna2genome_32_find_32_path.c ** Message: 19:44:55.757: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_region.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45 _freebsd13_46_0/optimal_58_cdna2genome_32_find_32_region.c ** Message: 19:45:31.126: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbl d_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.c ** Message: 19:47:37.983: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64 _45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.c ** Message: 19:49:31.420: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_score.o] ** Message: 19:49:31.423: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_score.o ** Message: 19:49:31.666: Adding function [optimal_58_cdna2genome_32_find_32_score] ** Message: 19:49:31.667: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_path.o] ** Message: 19:49:31.667: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_path.o ** Message: 19:49:31.886: Adding function [optimal_58_cdna2genome_32_find_32_path] ** Message: 19:49:31.887: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_region.o] ** Message: 19:49:31.887: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_region.o ** Message: 19:49:32.096: Adding function [optimal_58_cdna2genome_32_find_32_region] ** Message: 19:49:32.097: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.o] ** Message: 19:49:32.097: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.o ** Message: 19:49:32.348: Adding function [optimal_58_cdna2genome_32_find_32_checkpoint] ** Message: 19:49:32.349: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] ** Message: 19:49:32.349: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.o ** Message: 19:49:32.568: Adding function [optimal_58_cdna2genome_32_find_32_path_32_continuation] ** Message: 19:49:32.579: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0 /codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c ** Message: 19:49:35.997: Compiling codegen: cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/c odegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.c ** Message: 19:49:40.390: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: 19:49:40.391: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o ** Message: 19:49:40.629: Adding function [Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary] ** Message: 19:49:40.630: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] ** Message: 19:49:40.630: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/powerpc64_45_portbld_45_freebsd13_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o ** Message: 19:49:40.868: Adding function [Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary] ** Message: 19:49:40.870: Compiling with: [cc -O2 -pipe -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -o c4_model_lookup.o -c c4_model_lookup.c] ** Message: 19:49:42.714: Adding: [c4_model_lookup.o] ** Message: 19:49:42.715: Adding object file [c4_model_lookup.o] to archive ar -Sq c4_model_archive.a c4_model_lookup.o ** Message: 19:49:42.953: Indexing archive [c4_model_archive.a] ranlib c4_model_archive.a ** Message: 19:49:43.218: Done ** Message: 19:49:43.219: Finished building bootstrapping components cc -O2 -pipe -fno-strict-aliasing -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"powerpc64-portbld-freebsd13.0\"" -DSOURCE_ROOT_DIR="\"/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I. -DUSE_COMPILED_MODELS -c ../../src/c4/viterbi.c cc -O2 -pipe -fno-strict-aliasing -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"powerpc64-portbld-freebsd13.0\"" -DSOURCE_ROOT_DIR="\"/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I. -DUSE_COMPILED_MODELS -c ../../src/sdp/scheduler.c cc -O2 -pipe -fno-strict-aliasing -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -L/usr/local/lib -lgthread-2.0 -pthread -lglib-2.0 -lintl -lpthread -o exonerate exonerate.o viterbi.o scheduler.o c4_model_archive.a ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/seeder.o ../../src/comparison/comparison.o ../../src/database/fastapipe.o ../../src/database/fastadb.o ../../src/struct/dejavu.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/sparsecache.o ../../src/hub/gam.o ../../src/hub/bsam.o ../../src/hub/analysis.o ../../src/general/compoundfile.o ../../src/general/threadref.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/lookahead.o .. /../src/sdp/straceback.o ! ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/socket.o ../../src/general/jobqueue.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -L/usr/local/lib -lglib-2.0 -lintl viterbi.o:(.text+0x268c): undefined reference to `Bootstrapper_lookup' scheduler.o:(.text+0x1620): undefined reference to `Bootstrapper_lookup' *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/program *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0 *** Error code 1 Stop. make: stopped in /usr/ports/biology/exonerate
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