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Date:      Wed, 1 Dec 2021 16:22:27 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - main-armv7-default][biology/phyml] Failed for phyml-3.3.20200621,1 in stage
Message-ID:  <202112011622.1B1GMRpC090595@beefy12.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports@FreeBSD.org
Log URL:        http://beefy12.nyi.freebsd.org/data/main-armv7-default/p23db194e7338_sf8dc06303b/logs/phyml-3.3.20200621,1.log
Build URL:      http://beefy12.nyi.freebsd.org/build.html?mastername=main-armv7-default&build=p23db194e7338_sf8dc06303b
Log:

=>> Building biology/phyml
build started at Wed Dec  1 16:20:12 UTC 2021
port directory: /usr/ports/biology/phyml
package name: phyml-3.3.20200621,1
building for: FreeBSD main-armv7-default-job-11 14.0-CURRENT FreeBSD 14.0-CURRENT 1400041 arm
maintained by: ports@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400003
Jail OSVERSION: 1400041
Job Id: 11




!!! Jail is newer than host. (Jail: 1400041, Host: 1400003) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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SHELL=/bin/sh
UNAME_p=armv7
UNAME_m=arm
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UNAME_v=FreeBSD 14.0-CURRENT 1400041
UNAME_r=14.0-CURRENT
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MAIL=/var/mail/root
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POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-armv7-default
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OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for phyml-3.3.20200621,1:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
====> MPI (Message Passing Interface) support: you can only select none or one of them
     MPICH=off: Parallel processing support via MPICH 3
     OPENMPI=off: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
ports@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--disable-beagle --disable-native --disable-mpi --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/phyml/work/.cache  HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/phyml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/phyml/work/.cache  HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/phyml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/phyml"  EXAMPLESDIR="share/examples/phyml"  DATADIR="share/phyml"  WWWDIR="www/phyml"  ETCDIR="etc/phyml"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/phyml DOCSDIR=/usr/local/share/doc/phyml EXAMPLESDIR=/usr/local/share/examples/phyml  WWWDIR=/usr/local/www/phyml ETCDIR=/usr/local/etc/phyml
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv7
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
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CC_OUTPUT_9d218390_6bcac02b=yes
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CC_OUTPUT_9d218390_160933ec=yes
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#### Misc Poudriere ####
GID=0
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CC=/nxb-bin/usr/bin/cc
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OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
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RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
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FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>   NOTICE:

The phyml port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

<snip>
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed
checking whether /nxb-bin/usr/bin/cc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of /nxb-bin/usr/bin/cc... gcc3
checking dependency style of /nxb-bin/usr/bin/cc... (cached) gcc3
checking for log in -lm... yes
checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for float.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... (cached) yes
checking for pdflatex... no
checking for latex... no
configure: WARNING: Documentation will not be built!
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... (cached) yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for vprintf... (cached) yes
checking for _doprnt... no
checking for floor... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking for strchr... (cached) yes
checking for strstr... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating doc/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-beagle
===========================================================================
=======================<phase: build          >============================
===>  Building for phyml-3.3.20200621,1
/nxb-bin/usr/bin/make  all-recursive
Making all in src
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c
mv -f .deps/main.Tpo .deps/main.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT utilities.o -MD -MP -MF .deps/utilities.Tpo -c -o utilities.o utilities.c
utilities.c:8865:26: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
  while((c != '(') && (c != EOF));
                       ~ ^  ~~~
utilities.c:8867:7: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
  if(c==EOF)
     ~^ ~~~
utilities.c:8879:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c==EOF) break;
         ~^ ~~~
utilities.c:8886:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c==EOF || c==';') break;
         ~^ ~~~
utilities.c:9167:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c == EOF) break;
         ~ ^  ~~~
5 warnings generated.
mv -f .deps/utilities.Tpo .deps/utilities.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT optimiz.o -MD -MP -MF .deps/optimiz.Tpo -c -o optimiz.o optimiz.c
mv -f .deps/optimiz.Tpo .deps/optimiz.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT lk.o -MD -MP -MF .deps/lk.Tpo -c -o lk.o lk.c
mv -f .deps/lk.Tpo .deps/lk.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT bionj.o -MD -MP -MF .deps/bionj.Tpo -c -o bionj.o bionj.c
mv -f .deps/bionj.Tpo .deps/bionj.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT models.o -MD -MP -MF .deps/models.Tpo -c -o models.o models.c
mv -f .deps/models.Tpo .deps/models.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT free.o -MD -MP -MF .deps/free.Tpo -c -o free.o free.c
mv -f .deps/free.Tpo .deps/free.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT help.o -MD -MP -MF .deps/help.Tpo -c -o help.o help.c
mv -f .deps/help.Tpo .deps/help.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT simu.o -MD -MP -MF .deps/simu.Tpo -c -o simu.o simu.c
mv -f .deps/simu.Tpo .deps/simu.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT eigen.o -MD -MP -MF .deps/eigen.Tpo -c -o eigen.o eigen.c
mv -f .deps/eigen.Tpo .deps/eigen.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT pars.o -MD -MP -MF .deps/pars.Tpo -c -o pars.o pars.c
mv -f .deps/pars.Tpo .deps/pars.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT alrt.o -MD -MP -MF .deps/alrt.Tpo -c -o alrt.o alrt.c
mv -f .deps/alrt.Tpo .deps/alrt.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT interface.o -MD -MP -MF .deps/interface.Tpo -c -o interface.o interface.c
mv -f .deps/interface.Tpo .deps/interface.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT cl.o -MD -MP -MF .deps/cl.Tpo -c -o cl.o cl.c
mv -f .deps/cl.Tpo .deps/cl.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT spr.o -MD -MP -MF .deps/spr.Tpo -c -o spr.o spr.c
mv -f .deps/spr.Tpo .deps/spr.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT draw.o -MD -MP -MF .deps/draw.Tpo -c -o draw.o draw.c
mv -f .deps/draw.Tpo .deps/draw.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT stats.o -MD -MP -MF .deps/stats.Tpo -c -o stats.o stats.c
mv -f .deps/stats.Tpo .deps/stats.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT rates.o -MD -MP -MF .deps/rates.Tpo -c -o rates.o rates.c
mv -f .deps/rates.Tpo .deps/rates.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT mcmc.o -MD -MP -MF .deps/mcmc.Tpo -c -o mcmc.o mcmc.c
mv -f .deps/mcmc.Tpo .deps/mcmc.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT times.o -MD -MP -MF .deps/times.Tpo -c -o times.o times.c
mv -f .deps/times.Tpo .deps/times.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT tiporder.o -MD -MP -MF .deps/tiporder.Tpo -c -o tiporder.o tiporder.c
mv -f .deps/tiporder.Tpo .deps/tiporder.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT io.o -MD -MP -MF .deps/io.Tpo -c -o io.o io.c
io.c:1167:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c == EOF) return 0;
         ~ ^  ~~~
io.c:1177:16: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
          if(c == EOF) return 0;
             ~ ^  ~~~
io.c:1182:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c == EOF) return 0;
         ~ ^  ~~~
io.c:1193:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c == EOF) return 0;
         ~ ^  ~~~
io.c:1214:16: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
          if(c == EOF) return 0;
             ~ ^  ~~~
io.c:1542:17: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      else if(c == EOF)
              ~ ^  ~~~
io.c:1571:8: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
  if(c == EOF) return 0;
     ~ ^  ~~~
io.c:1633:26: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
  while((c != '(') && (c != EOF));
                       ~ ^  ~~~
io.c:1636:7: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
  if(c==EOF) return NULL;
     ~^ ~~~
io.c:1648:16: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
          if(c == EOF || c == ';') break;
             ~ ^  ~~~
io.c:1664:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
      if(c==EOF || c==';') break;
         ~^ ~~~
11 warnings generated.
mv -f .deps/io.Tpo .deps/io.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT make.o -MD -MP -MF .deps/make.Tpo -c -o make.o make.c
mv -f .deps/make.Tpo .deps/make.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT nexus.o -MD -MP -MF .deps/nexus.Tpo -c -o nexus.o nexus.c
mv -f .deps/nexus.Tpo .deps/nexus.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT init.o -MD -MP -MF .deps/init.Tpo -c -o init.o init.c
mv -f .deps/init.Tpo .deps/init.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT xml.o -MD -MP -MF .deps/xml.Tpo -c -o xml.o xml.c
mv -f .deps/xml.Tpo .deps/xml.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT date.o -MD -MP -MF .deps/date.Tpo -c -o date.o date.c
mv -f .deps/date.Tpo .deps/date.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT sse.o -MD -MP -MF .deps/sse.Tpo -c -o sse.o sse.c
mv -f .deps/sse.Tpo .deps/sse.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT avx.o -MD -MP -MF .deps/avx.Tpo -c -o avx.o avx.c
mv -f .deps/avx.Tpo .deps/avx.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT tbe.o -MD -MP -MF .deps/tbe.Tpo -c -o tbe.o tbe.c
mv -f .deps/tbe.Tpo .deps/tbe.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT ancestral.o -MD -MP -MF .deps/ancestral.Tpo -c -o ancestral.o ancestral.c
mv -f .deps/ancestral.Tpo .deps/ancestral.Po
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT mixt.o -MD -MP -MF .deps/mixt.Tpo -c -o mixt.o mixt.c
mv -f .deps/mixt.Tpo .deps/mixt.Po
/nxb-bin/usr/bin/cc  -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline   -o phyml main.o  utilities.o  optimiz.o  lk.o  bionj.o  models.o  free.o  help.o  simu.o  eigen.o  pars.o  alrt.o  interface.o  cl.o  spr.o  draw.o  stats.o  rates.o  mcmc.o  times.o  tiporder.o  io.o  make.o  nexus.o  init.o  xml.o  date.o  sse.o  avx.o  tbe.o  ancestral.o  mixt.o -lm -lm


.:  Building [phyml]. Version 3.3.20200621 :.



Done.
===========================================================================
=======================<phase: run-depends    >============================
===========================================================================
=======================<phase: stage          >============================
===>  Staging for phyml-3.3.20200621,1
===>   Generating temporary packing list
Making install in src


.:  Building [phyml]. Version 3.3.20200621 :.



Done.
 /bin/mkdir -p '/wrkdirs/usr/ports/biology/phyml/work/stage/usr/local/bin'
  install  -s -m 555 phyml '/wrkdirs/usr/ports/biology/phyml/work/stage/usr/local/bin'
(cd /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20200621/doc && install  -m 0644 *.pdf  /wrkdirs/usr/ports/biology/phyml/work/stage/usr/local/share/doc/phyml)
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/phyml



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