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Date:      Sat, 23 Feb 2008 22:16:33 +1100 (EST)
From:      Timothy Bourke <timbob@bigpond.com>
To:        FreeBSD-gnats-submit@FreeBSD.org
Subject:   ports/121000: [MAINTAINER] math/isabelle: update to 2007 version
Message-ID:  <200802231116.m1NBGXpd068023@triptrop.cse.unsw.edu.au>
Resent-Message-ID: <200802231700.m1NH07u9015705@freefall.freebsd.org>

---

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---

>Number:         121000
>Category:       ports
>Synopsis:       [MAINTAINER] math/isabelle: update to 2007 version
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Sat Feb 23 17:00:07 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator:     Timothy Bourke
>Release:        FreeBSD 6.3-RELEASE i386
>Organization:
>Environment:
System: FreeBSD triptrop 6.3-RELEASE FreeBSD 6.3-RELEASE #1: Tue Jan 22 11:23:08 EST 2008
>Description:
- Update to Isabelle 2007 version

This maintainer-update is accompanied by two others:
    lang/polyml
    math/proofgeneral
Ideally, the three would be committed together.

Added file(s):
- files/patch-lib-Tools-codegen
- files/patch-lib-Tools-keywords
- files/patch-lib-Tools-mkproject
- files/patch-lib-scripts-configure
- files/patch-lib-scripts-fileindent
- files/patch-lib-scripts-run_polyml_5.0
- files/patch-lib-scripts-run_polyml_5.1
- files/patch-lib-scripts-run_poplogml
- files/patch-lib-scripts-timestart.bash
- files/patch-lib-scripts-timestop.bash

Removed file(s):
- files/patch-lib-scripts-showtime
- files/polyml-5.0.ML
- files/proofgeneral-settings.el
- files/run-polyml-5.0

Generated with FreeBSD Port Tools 0.77
>How-To-Repeat:
>Fix:

--- isabelle-2007.patch begins here ---
Index: Makefile
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/Makefile,v
retrieving revision 1.7
diff -u -r1.7 Makefile
--- Makefile	29 Sep 2007 20:58:03 -0000	1.7
+++ Makefile	23 Feb 2008 11:14:28 -0000
@@ -2,21 +2,20 @@
 # Date created:        08 August 2005
 # Whom:                Timothy Bourke <timbob@bigpond.com>
 #
-# $FreeBSD: ports/math/isabelle/Makefile,v 1.7 2007/09/29 20:58:03 linimon Exp $
+# $FreeBSD$
 #
 
 PORTNAME=	isabelle
-PORTVERSION=	2005
-PORTREVISION=	2
+PORTVERSION=	2007
 CATEGORIES=	math
 MASTER_SITES=	http://isabelle.in.tum.de/dist/ \
 		http://www.cl.cam.ac.uk/Research/HVG/Isabelle/dist/ \
 		http://mirror.cse.unsw.edu.au/pub/isabelle/dist/
-DISTNAME=	Isabelle2005
+DISTNAME=	Isabelle2007
 .if !defined(NOPORTDOCS)
-DISTFILES=	Isabelle2005.tar.gz \
-		Isabelle2005_library.tar.gz \
-		Isabelle2005_pdf.tar.gz
+DISTFILES=	Isabelle2007.tar.gz \
+		Isabelle2007_library.tar.gz \
+		Isabelle2007_pdf.tar.gz
 .endif
 
 MAINTAINER=	timbob@bigpond.com
@@ -35,21 +34,19 @@
 ML_SYSTEM=	smlnj-110
 ML_HOME=	${LOCALBASE}/bin
 ML_OPTIONS=	@SMLdebug=/dev/null
-ML_PLATFORM=	x86-bsd
 .else
-ML_SYSTEM=	polyml-5.0
+ML_SYSTEM=	polyml-5.1
 ML_HOME=	${LOCALBASE}/bin
 ML_OPTIONS=	-H 500
 ML_DBASE=	""
-ML_PLATFORM=	""
 .endif
+ML_PLATFORM=	x86-bsd
 
-.if defined(WITH_SMLNJ)
 PLIST_SUB=	HEAPSUBDIR=${ML_SYSTEM}_${ML_PLATFORM}
+.if defined(WITH_SMLNJ)
 BUILD_DEPENDS+=	smlnj-devel>=110.65:${PORTSDIR}/lang/sml-nj-devel
 MAKE_ENV+=	SMLNJ_DEVEL=yes
 .else
-PLIST_SUB=	HEAPSUBDIR=${ML_SYSTEM}
 BUILD_DEPENDS+=	poly:${PORTSDIR}/lang/polyml
 RUN_DEPENDS+=	poly:${PORTSDIR}/lang/polyml
 .endif
@@ -58,12 +55,6 @@
 
 post-extract:
 	@${CP} ${FILESDIR}/Makefile ${WRKSRC}
-	@${CP} ${FILESDIR}/run-polyml-5.0 ${WRKSRC}/lib/scripts/
-	@${CHMOD} ugo+x ${WRKSRC}/lib/scripts/run-polyml-5.0
-	@${CP} ${FILESDIR}/polyml-5.0.ML ${WRKSRC}/src/Pure/ML-Systems/
-.if !defined(WITH_SMLNJ)
-	@${CP} ${FILESDIR}/proofgeneral-settings.el ${WRKSRC}/etc/
-.endif
 
 post-patch:
 	@${MV} ${WRKSRC}/etc/settings ${WRKSRC}/etc/settings.presed
Index: distinfo
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/distinfo,v
retrieving revision 1.3
diff -u -r1.3 distinfo
--- distinfo	7 Jun 2006 14:17:39 -0000	1.3
+++ distinfo	23 Feb 2008 11:14:28 -0000
@@ -1,9 +1,9 @@
-MD5 (Isabelle2005.tar.gz) = b40a7eff0c9897753f80ffad976b6d2e
-SHA256 (Isabelle2005.tar.gz) = a8afaef94bb2efa91309f6dd7812a83628a2df2c3a954d32894529e9eee7f99f
-SIZE (Isabelle2005.tar.gz) = 6168654
-MD5 (Isabelle2005_library.tar.gz) = 69ddee5572768865f132ccc38980a6e9
-SHA256 (Isabelle2005_library.tar.gz) = d7b1a101ddc2e139ef68c7e2d9731df24f9a749b1432948311ecf87f5e7ec53d
-SIZE (Isabelle2005_library.tar.gz) = 29778664
-MD5 (Isabelle2005_pdf.tar.gz) = ba3a1faa32d585e1d9d21e411452907b
-SHA256 (Isabelle2005_pdf.tar.gz) = 008842cfa2b6252e130af7695a98af8ff173cc2a41a712f9ab50419b10fe1a87
-SIZE (Isabelle2005_pdf.tar.gz) = 4628889
+MD5 (Isabelle2007.tar.gz) = 088e56b79a4c8cd3e4de7dad62a35827
+SHA256 (Isabelle2007.tar.gz) = eb270bc44ddb8195c6b80eb80894555671119d12b7aa8d2aa31d1b2149604f26
+SIZE (Isabelle2007.tar.gz) = 7577495
+MD5 (Isabelle2007_library.tar.gz) = a257ee276275619832748c07cf0257b5
+SHA256 (Isabelle2007_library.tar.gz) = b0f407e69d6406d0313c5d0c3a030267908e43b134532eb836fc6236ed440647
+SIZE (Isabelle2007_library.tar.gz) = 37173555
+MD5 (Isabelle2007_pdf.tar.gz) = b7b0f6965dc3e9f2a88c35d2f3c0cad7
+SHA256 (Isabelle2007_pdf.tar.gz) = a9d34030f17d28420bdddecd661e2664c7db1171f278fdbf0f10c7daf3fded32
+SIZE (Isabelle2007_pdf.tar.gz) = 6024675
Index: pkg-plist
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/pkg-plist,v
retrieving revision 1.5
diff -u -r1.5 pkg-plist
--- pkg-plist	10 Sep 2007 12:11:09 -0000	1.5
+++ pkg-plist	23 Feb 2008 11:15:40 -0000
@@ -8,39 +8,23 @@
 %%PORTDOCS%%%%DOCSDIR%%/axclass.pdf
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/.session/pre-index
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/CCL.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/CCL.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Fix.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Fix.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Gfp.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Gfp.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/GraphBrowser.jar
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Hered.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Hered.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Lfp.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Lfp.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Set.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Set.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Term.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Term.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Trancl.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Trancl.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Type.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Type.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/Wfd.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/coinduction.ML.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/equalities.ML.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/eval.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/.session/pre-index
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/Flag.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/Flag.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/GraphBrowser.jar
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/List.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/List.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/Nat.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/Nat.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/Stream.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/Stream.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/index.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/isabelle.css
@@ -48,31 +32,27 @@
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/medium.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/session.graph
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/ex/small.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/genrec.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/index.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/isabelle.css
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/large.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/medium.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/mono.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/session.graph
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/small.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/subset.ML.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/typecheck.ML.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CCL/wfd.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/.session/pre-index
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/Arith.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/Arith.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/Bool.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/Bool.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/CTT.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/CTT.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/GraphBrowser.jar
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/Main.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/README.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/.session/pre-index
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/Elimination.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/Equality.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/GraphBrowser.jar
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/Synthesis.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/Typechecking.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/index.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/isabelle.css
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/CTT/ex/large.html
@@ -101,39 +81,37 @@
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/Cube/small.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/.session/pre-index
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/FOL.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/FOL.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/FOL_lemmas1.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/GraphBrowser.jar
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/IFOL.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/IFOL.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/IFOL_lemmas.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/README.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/blast.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/blastdata.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/cladata.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/clasimp.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/classical.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/document.pdf
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/eqrule_FOL_data.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/eqsubst.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/.session/pre-index
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Classical.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/First_Order_Logic.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Foundation.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/GraphBrowser.jar
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/If.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/IffOracle.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Intro.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Intuitionistic.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/List.ML.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/List.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/LocaleTest.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Nat.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Miniscope.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Nat.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Nat2.ML.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Nat2.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/NatClass.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/NatClass.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Natural_Numbers.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Prolog.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Prolog.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Propositional_Cla.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Propositional_Int.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Quantifiers_Cla.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/Quantifiers_Int.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/document.pdf
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/index.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/isabelle.css
@@ -143,16 +121,25 @@
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/session.graph
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/ex/small.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/fologic.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/hypsubst.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/hypsubstdata.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/index.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/induct.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/intprover.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/isabelle.css
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/isand.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/large.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/medium.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/outline.pdf
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/project_rule.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/quantifier1.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/rw_inst.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/rw_tools.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/session.graph
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/simpdata.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/small.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/splitter.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/FOL/zipper.ML.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOLP/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOLP/.session/pre-index
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOLP/FOLP.html
@@ -186,12 +173,15 @@
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/FOLP/small.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/.session/pre-index
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/AtpCommunication.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/ATP_Linkup.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Accessible_Part.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Arith_Tools.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/.session/pre-index
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Analz.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/CertifiedEmail.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Event.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/EventSC.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Extensions.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/GraphBrowser.jar
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Guard.html
@@ -202,7 +192,10 @@
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Guard_Shared.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Guard_Yahalom.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/KerberosIV.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/KerberosIV_Gets.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/KerberosV.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Kerberos_BAN.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Kerberos_BAN_Gets.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/List_Msg.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Message.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/NS_Public.html
@@ -210,6 +203,7 @@
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/NS_Shared.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/NatPair.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/OtwayRees.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/OtwayReesBella.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/OtwayRees_AN.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/OtwayRees_Bad.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/P1.html
@@ -219,6 +213,9 @@
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/README.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Recur.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Shared.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/ShoupRubin.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/ShoupRubinBella.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Smartcard.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/TLS.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/WooLam.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Auth/Yahalom.html
@@ -281,20 +278,29 @@
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Bali/outline.pdf
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Bali/session.graph
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Bali/small.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Binomial.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Datatype.ML.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Code_Setup.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Datatype.html
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Datatype_Universe.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Dense_Linear_Order.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Divides.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Equiv_Relations.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/.session/entries
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/.session/pre-index
-%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/EfficientNat.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/Code_Index.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/Code_Integer.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/Efficient_Nat.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/Euclid.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/Factorization.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/GCD.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/GraphBrowser.jar
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/Greatest_Common_Divisor.html
 %%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/Higman.html
+%%PORTDOCS%%%%DOCSDIR%%/browser_info/HOL/Extraction/Multiset.html
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+%%DATADIR%%/lib/html/library_index_content.template
+%%DATADIR%%/lib/html/library_index_footer.template
+%%DATADIR%%/lib/html/library_index_header.template
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+%%DATADIR%%/src/HOL/Nominal/nominal_fresh_fun.ML
+%%DATADIR%%/src/HOL/Nominal/nominal_induct.ML
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+%%DATADIR%%/src/HOL/Nominal/nominal_permeq.ML
+%%DATADIR%%/src/HOL/Nominal/nominal_primrec.ML
+%%DATADIR%%/src/HOL/Nominal/nominal_thmdecls.ML
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@@ -2764,26 +2997,24 @@
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-%%DATADIR%%/src/HOL/OrderedGroup.ML
+%%DATADIR%%/src/HOL/Numeral.thy
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+%%DATADIR%%/src/HOL/Prolog/prolog.ML
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-%%DATADIR%%/src/HOL/Real/Float.ML
+%%DATADIR%%/src/HOL/Real/ContNotDenum.thy
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@@ -2804,19 +3035,17 @@
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-%%DATADIR%%/src/HOL/Real/document/root.tex
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@@ -2829,9 +3058,30 @@
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+%%DATADIR%%/src/HOL/Statespace/distinct_tree_prover.ML
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@@ -2839,94 +3089,112 @@
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-%%DATADIR%%/src/HOL/TLA/Memory/RPC.ML
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-%%DATADIR%%/src/HOL/TLA/Memory/RPCParameters.ML
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-%%DATADIR%%/src/HOL/Tools/ATP/recon_transfer_proof.ML
-%%DATADIR%%/src/HOL/Tools/ATP/recon_translate_proof.ML
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+%%DATADIR%%/src/HOL/Tools/Groebner_Basis/normalizer_data.ML
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+%%DATADIR%%/src/HOL/Tools/Qelim/cooper_data.ML
+%%DATADIR%%/src/HOL/Tools/Qelim/ferrante_rackoff.ML
+%%DATADIR%%/src/HOL/Tools/Qelim/ferrante_rackoff_data.ML
+%%DATADIR%%/src/HOL/Tools/Qelim/generated_cooper.ML
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+%%DATADIR%%/src/HOL/Tools/datatype_case.ML
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+%%DATADIR%%/src/HOL/Tools/dseq.ML
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+%%DATADIR%%/src/HOL/Tools/inductive_set_package.ML
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+%%DATADIR%%/src/HOL/Tools/res_atp_methods.ML
+%%DATADIR%%/src/HOL/Tools/res_atp_provers.ML
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-%%DATADIR%%/src/HOL/Tools/res_types_sorts.ML
+%%DATADIR%%/src/HOL/Tools/res_hol_clause.ML
+%%DATADIR%%/src/HOL/Tools/res_reconstruct.ML
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+%%DATADIR%%/src/HOL/ex/Classpackage.thy
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-%%DATADIR%%/src/HOL/ex/InSort.thy
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+%%DATADIR%%/src/HOL/ex/LexOrds.thy
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-%%DATADIR%%/src/HOL/ex/MT.ML
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-%%DATADIR%%/src/HOL/ex/Qsort.thy
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+%%DATADIR%%/src/HOL/ex/Random.thy
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+%%DATADIR%%/src/HOL/ex/Reflection.thy
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-%%DATADIR%%/src/HOL/ex/SVC_Oracle.ML
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-%%DATADIR%%/src/HOL/ex/StringEx.thy
+%%DATADIR%%/src/HOL/ex/Sudoku.thy
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-%%DATADIR%%/src/HOL/ex/Tuple.thy
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-%%DATADIR%%/src/HOL/ex/mesontest2.ML
-%%DATADIR%%/src/HOL/ex/mesontest2.thy
+%%DATADIR%%/src/HOL/ex/reflection.ML
+%%DATADIR%%/src/HOL/ex/reflection_data.ML
 %%DATADIR%%/src/HOL/ex/set.thy
 %%DATADIR%%/src/HOL/ex/svc_funcs.ML
-%%DATADIR%%/src/HOL/ex/svc_test.ML
 %%DATADIR%%/src/HOL/ex/svc_test.thy
 %%DATADIR%%/src/HOL/hologic.ML
+%%DATADIR%%/src/HOL/int_arith1.ML
+%%DATADIR%%/src/HOL/int_factor_simprocs.ML
+%%DATADIR%%/src/HOL/nat_simprocs.ML
 %%DATADIR%%/src/HOL/simpdata.ML
-%%DATADIR%%/src/HOL/thy_syntax.ML
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-%%DATADIR%%/src/HOLCF/Cprod.ML
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-%%DATADIR%%/src/HOLCF/FOCUS/Buffer.ML
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-%%DATADIR%%/src/HOLCF/FOCUS/Buffer_adm.ML
 %%DATADIR%%/src/HOLCF/FOCUS/Buffer_adm.thy
-%%DATADIR%%/src/HOLCF/FOCUS/FOCUS.ML
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-%%DATADIR%%/src/HOLCF/FOCUS/Fstream.ML
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-%%DATADIR%%/src/HOLCF/FOCUS/Stream_adm.ML
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-%%DATADIR%%/src/HOLCF/Fix.ML
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-%%DATADIR%%/src/HOLCF/HOLCF.ML
 %%DATADIR%%/src/HOLCF/HOLCF.thy
 %%DATADIR%%/src/HOLCF/IMP/Denotational.thy
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@@ -3083,12 +3383,10 @@
 %%DATADIR%%/src/HOLCF/IOA/ABP/Abschannel_finite.thy
 %%DATADIR%%/src/HOLCF/IOA/ABP/Action.thy
 %%DATADIR%%/src/HOLCF/IOA/ABP/Check.ML
-%%DATADIR%%/src/HOLCF/IOA/ABP/Correctness.ML
 %%DATADIR%%/src/HOLCF/IOA/ABP/Correctness.thy
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-%%DATADIR%%/src/HOLCF/IOA/ABP/Lemmas.ML
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 %%DATADIR%%/src/HOLCF/IOA/ABP/Packet.thy
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@@ -3096,155 +3394,98 @@
 %%DATADIR%%/src/HOLCF/IOA/ABP/Receiver.thy
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-%%DATADIR%%/src/HOLCF/IOA/Modelcheck/Cockpit.ML
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-%%DATADIR%%/src/HOLCF/IOA/Modelcheck/MuIOA.ML
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-%%DATADIR%%/src/HOLCF/IOA/Modelcheck/MuIOAOracle.ML
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-%%DATADIR%%/src/HOLCF/IOA/Modelcheck/Ring3.ML
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-%%DATADIR%%/src/HOLCF/IOA/NTP/Abschannel.ML
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-%%DATADIR%%/src/HOLCF/IOA/NTP/Receiver.ML
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-%%DATADIR%%/src/HOLCF/IOA/NTP/Sender.ML
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-%%DATADIR%%/src/HOLCF/IOA/meta_theory/LiveIOA.ML
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-%%DATADIR%%/src/HOLCF/Tr.ML
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+%%DATADIR%%/src/HOLCF/Tools/domain/domain_axioms.ML
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+%%DATADIR%%/src/HOLCF/Tools/domain/domain_syntax.ML
+%%DATADIR%%/src/HOLCF/Tools/domain/domain_theorems.ML
+%%DATADIR%%/src/HOLCF/Tools/fixrec_package.ML
+%%DATADIR%%/src/HOLCF/Tools/pcpodef_package.ML
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-%%DATADIR%%/src/LCF/ex/Ex1.ML
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-%%DATADIR%%/src/LCF/ex/Ex3.ML
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-%%DATADIR%%/src/LCF/pair.ML
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@@ -3261,10 +3502,8 @@
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-%%DATADIR%%/src/Provers/ind.ML
-%%DATADIR%%/src/Provers/induct_method.ML
-%%DATADIR%%/src/Provers/make_elim.ML
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+%%DATADIR%%/src/Provers/project_rule.ML
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@@ -3273,20 +3512,24 @@
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+%%DATADIR%%/src/Pure/General/balanced_tree.ML
+%%DATADIR%%/src/Pure/General/basics.ML
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-%%DATADIR%%/src/Pure/General/lazy_scan.ML
-%%DATADIR%%/src/Pure/General/lazy_seq.ML
+%%DATADIR%%/src/Pure/General/integer.ML
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+%%DATADIR%%/src/Pure/General/print_mode.ML
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+%%DATADIR%%/src/Pure/General/secure.ML
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@@ -3296,29 +3539,25 @@
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-%%DATADIR%%/src/Pure/IsaPlanner/upterm_lib.ML
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+%%DATADIR%%/src/Pure/Isar/class.ML
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+%%DATADIR%%/src/Pure/Isar/element.ML
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-%%DATADIR%%/src/Pure/Isar/induct_attrib.ML
+%%DATADIR%%/src/Pure/Isar/instance.ML
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-%%DATADIR%%/src/Pure/Isar/isar_output.ML
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-%%DATADIR%%/src/Pure/Isar/isar_thy.ML
+%%DATADIR%%/src/Pure/Isar/local_defs.ML
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+%%DATADIR%%/src/Pure/Isar/local_theory.ML
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@@ -3333,38 +3572,66 @@
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+%%DATADIR%%/src/Pure/Isar/rule_insts.ML
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-%%DATADIR%%/src/Pure/Isar/term_style.ML
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+%%DATADIR%%/src/Pure/Isar/spec_parse.ML
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-%%DATADIR%%/src/Pure/ML-Systems/cpu-timer-gc.ML
+%%DATADIR%%/src/Pure/ML-Systems/alice.ML
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 %%DATADIR%%/src/Pure/ML-Systems/mosml.ML
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+%%DATADIR%%/src/Pure/ML-Systems/multithreading_polyml.ML
+%%DATADIR%%/src/Pure/ML-Systems/overloading_smlnj.ML
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-%%DATADIR%%/src/Pure/ML-Systems/polyml-time-limit.ML
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-%%DATADIR%%/src/Pure/ML-Systems/smlnj-pp-old.ML
-%%DATADIR%%/src/Pure/ML-Systems/smlnj-ptreql.ML
+%%DATADIR%%/src/Pure/ML-Systems/poplogml.ML
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+%%DATADIR%%/src/Pure/ML-Systems/time_limit.ML
+%%DATADIR%%/src/Pure/ML/ml_context.ML
+%%DATADIR%%/src/Pure/ML/ml_lex.ML
+%%DATADIR%%/src/Pure/ML/ml_parse.ML
+%%DATADIR%%/src/Pure/ML/ml_syntax.ML
 %%DATADIR%%/src/Pure/Proof/extraction.ML
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+%%DATADIR%%/src/Pure/ProofGeneral/README
+%%DATADIR%%/src/Pure/ProofGeneral/ROOT.ML
+%%DATADIR%%/src/Pure/ProofGeneral/TODO
+%%DATADIR%%/src/Pure/ProofGeneral/pgip.ML
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+%%DATADIR%%/src/Pure/ProofGeneral/pgip_isabelle.ML
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+%%DATADIR%%/src/Pure/ProofGeneral/pgip_output.ML
+%%DATADIR%%/src/Pure/ProofGeneral/pgip_parser.ML
+%%DATADIR%%/src/Pure/ProofGeneral/pgip_tests.ML
+%%DATADIR%%/src/Pure/ProofGeneral/pgip_types.ML
+%%DATADIR%%/src/Pure/ProofGeneral/pgml.ML
+%%DATADIR%%/src/Pure/ProofGeneral/pgml_isabelle.ML
+%%DATADIR%%/src/Pure/ProofGeneral/preferences.ML
+%%DATADIR%%/src/Pure/ProofGeneral/proof_general_emacs.ML
+%%DATADIR%%/src/Pure/ProofGeneral/proof_general_keywords.ML
+%%DATADIR%%/src/Pure/ProofGeneral/proof_general_pgip.ML
 %%DATADIR%%/src/Pure/Pure.thy
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-%%DATADIR%%/src/Pure/Syntax/ROOT.ML
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+%%DATADIR%%/src/Pure/Syntax/simple_syntax.ML
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@@ -3372,96 +3639,203 @@
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+%%DATADIR%%/src/Pure/Thy/term_style.ML
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 %%DATADIR%%/src/Pure/Thy/thm_deps.ML
+%%DATADIR%%/src/Pure/Thy/thy_edit.ML
+%%DATADIR%%/src/Pure/Thy/thy_header.ML
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-%%DATADIR%%/src/Pure/Thy/thy_parse.ML
-%%DATADIR%%/src/Pure/Thy/thy_scan.ML
-%%DATADIR%%/src/Pure/Thy/thy_syn.ML
+%%DATADIR%%/src/Pure/Thy/thy_output.ML
 %%DATADIR%%/src/Pure/Tools/ROOT.ML
-%%DATADIR%%/src/Pure/Tools/am_compiler.ML
-%%DATADIR%%/src/Pure/Tools/am_interpreter.ML
-%%DATADIR%%/src/Pure/Tools/am_util.ML
-%%DATADIR%%/src/Pure/Tools/compute.ML
+%%DATADIR%%/src/Pure/Tools/invoke.ML
+%%DATADIR%%/src/Pure/Tools/isabelle.xsd
+%%DATADIR%%/src/Pure/Tools/named_thms.ML
+%%DATADIR%%/src/Pure/Tools/xml_syntax.ML
+%%DATADIR%%/src/Pure/assumption.ML
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+%%DATADIR%%/src/Pure/config.ML
+%%DATADIR%%/src/Pure/conjunction.ML
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+%%DATADIR%%/src/Pure/context_position.ML
+%%DATADIR%%/src/Pure/conv.ML
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-%%DATADIR%%/src/Pure/goals.ML
-%%DATADIR%%/src/Pure/install_pp.ML
+%%DATADIR%%/src/Pure/goal.ML
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+%%DATADIR%%/src/Pure/more_thm.ML
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-%%DATADIR%%/src/Pure/proof_general.ML
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+%%DATADIR%%/src/Pure/pure_setup.ML
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+%%DATADIR%%/src/Pure/subgoal.ML
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+%%DATADIR%%/src/Pure/term_subst.ML
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-%%DATADIR%%/src/Sequents/ILL.ML
+%%DATADIR%%/src/Pure/variable.ML
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-%%DATADIR%%/src/Sequents/ILL/ILL_predlog.ML
-%%DATADIR%%/src/Sequents/ILL/ILL_predlog.thy
-%%DATADIR%%/src/Sequents/ILL/ROOT.ML
-%%DATADIR%%/src/Sequents/ILL/washing.ML
-%%DATADIR%%/src/Sequents/ILL/washing.thy
+%%DATADIR%%/src/Sequents/ILL_predlog.thy
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-%%DATADIR%%/src/Sequents/LK/Nat.ML
+%%DATADIR%%/src/Sequents/LK/Hard_Quantifiers.thy
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+%%DATADIR%%/src/Sequents/Washing.thy
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-%%DATADIR%%/src/TFL/casesplit.ML
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+%%DATADIR%%/src/Tools/Compute_Oracle/report.ML
+%%DATADIR%%/src/Tools/IsaPlanner/README
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+%%DATADIR%%/src/Tools/IsaPlanner/rw_tools.ML
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+%%DATADIR%%/src/Tools/Metis/scripts/mlpp
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+%%DATADIR%%/src/Tools/Metis/src/Options.sig
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+%%DATADIR%%/src/Tools/Metis/src/PortableMosml.sml
+%%DATADIR%%/src/Tools/Metis/src/PortableSmlNJ.sml
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+%%DATADIR%%/src/Tools/Metis/src/Problem.sml
+%%DATADIR%%/src/Tools/Metis/src/Proof.sig
+%%DATADIR%%/src/Tools/Metis/src/Proof.sml
+%%DATADIR%%/src/Tools/Metis/src/Random.sig
+%%DATADIR%%/src/Tools/Metis/src/Random.sml
+%%DATADIR%%/src/Tools/Metis/src/RandomMap.sml
+%%DATADIR%%/src/Tools/Metis/src/RandomSet.sml
+%%DATADIR%%/src/Tools/Metis/src/Resolution.sig
+%%DATADIR%%/src/Tools/Metis/src/Resolution.sml
+%%DATADIR%%/src/Tools/Metis/src/Rewrite.sig
+%%DATADIR%%/src/Tools/Metis/src/Rewrite.sml
+%%DATADIR%%/src/Tools/Metis/src/Rule.sig
+%%DATADIR%%/src/Tools/Metis/src/Rule.sml
+%%DATADIR%%/src/Tools/Metis/src/Set.sig
+%%DATADIR%%/src/Tools/Metis/src/Set.sml
+%%DATADIR%%/src/Tools/Metis/src/Sharing.sig
+%%DATADIR%%/src/Tools/Metis/src/Sharing.sml
+%%DATADIR%%/src/Tools/Metis/src/Stream.sig
+%%DATADIR%%/src/Tools/Metis/src/Stream.sml
+%%DATADIR%%/src/Tools/Metis/src/Subst.sig
+%%DATADIR%%/src/Tools/Metis/src/Subst.sml
+%%DATADIR%%/src/Tools/Metis/src/Subsume.sig
+%%DATADIR%%/src/Tools/Metis/src/Subsume.sml
+%%DATADIR%%/src/Tools/Metis/src/Term.sig
+%%DATADIR%%/src/Tools/Metis/src/Term.sml
+%%DATADIR%%/src/Tools/Metis/src/TermNet.sig
+%%DATADIR%%/src/Tools/Metis/src/TermNet.sml
+%%DATADIR%%/src/Tools/Metis/src/Thm.sig
+%%DATADIR%%/src/Tools/Metis/src/Thm.sml
+%%DATADIR%%/src/Tools/Metis/src/Tptp.sig
+%%DATADIR%%/src/Tools/Metis/src/Tptp.sml
+%%DATADIR%%/src/Tools/Metis/src/Units.sig
+%%DATADIR%%/src/Tools/Metis/src/Units.sml
+%%DATADIR%%/src/Tools/Metis/src/Useful.sig
+%%DATADIR%%/src/Tools/Metis/src/Useful.sml
+%%DATADIR%%/src/Tools/Metis/src/Waiting.sig
+%%DATADIR%%/src/Tools/Metis/src/Waiting.sml
+%%DATADIR%%/src/Tools/Metis/src/metis.sml
+%%DATADIR%%/src/Tools/Metis/src/problems.sml
+%%DATADIR%%/src/Tools/Metis/src/problems2tptp.sml
+%%DATADIR%%/src/Tools/Metis/src/selftest.sml
+%%DATADIR%%/src/Tools/README
+%%DATADIR%%/src/Tools/code/code_funcgr.ML
+%%DATADIR%%/src/Tools/code/code_name.ML
+%%DATADIR%%/src/Tools/code/code_package.ML
+%%DATADIR%%/src/Tools/code/code_target.ML
+%%DATADIR%%/src/Tools/code/code_thingol.ML
+%%DATADIR%%/src/Tools/float.ML
+%%DATADIR%%/src/Tools/induct.ML
+%%DATADIR%%/src/Tools/nbe.ML
+%%DATADIR%%/src/Tools/rat.ML
 %%DATADIR%%/src/ZF/AC.thy
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@@ -3484,6 +3858,7 @@
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 %%DATADIR%%/src/ZF/Arith.thy
 %%DATADIR%%/src/ZF/ArithSimp.thy
+%%DATADIR%%/src/ZF/Bin.thy
 %%DATADIR%%/src/ZF/Bool.thy
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@@ -3519,9 +3894,9 @@
 %%DATADIR%%/src/ZF/Constructible/Wellorderings.thy
 %%DATADIR%%/src/ZF/Constructible/document/root.bib
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-%%DATADIR%%/src/ZF/Datatype.ML
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+%%DATADIR%%/src/ZF/EquivClass.thy
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 %%DATADIR%%/src/ZF/IMP/Com.thy
@@ -3548,21 +3923,14 @@
 %%DATADIR%%/src/ZF/Induct/Term.thy
 %%DATADIR%%/src/ZF/Induct/Tree_Forest.thy
 %%DATADIR%%/src/ZF/Induct/document/root.tex
-%%DATADIR%%/src/ZF/Inductive.ML
 %%DATADIR%%/src/ZF/Inductive.thy
 %%DATADIR%%/src/ZF/InfDatatype.thy
-%%DATADIR%%/src/ZF/Integ/Bin.thy
-%%DATADIR%%/src/ZF/Integ/EquivClass.thy
-%%DATADIR%%/src/ZF/Integ/Int.thy
-%%DATADIR%%/src/ZF/Integ/IntArith.thy
-%%DATADIR%%/src/ZF/Integ/IntDiv.thy
-%%DATADIR%%/src/ZF/Integ/int_arith.ML
-%%DATADIR%%/src/ZF/Integ/twos_compl.ML
+%%DATADIR%%/src/ZF/Int.thy
+%%DATADIR%%/src/ZF/IntArith.thy
+%%DATADIR%%/src/ZF/IntDiv.thy
 %%DATADIR%%/src/ZF/IsaMakefile
 %%DATADIR%%/src/ZF/List.thy
-%%DATADIR%%/src/ZF/Main.ML
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-%%DATADIR%%/src/ZF/Main_ZFC.ML
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@@ -3590,6 +3958,7 @@
 %%DATADIR%%/src/ZF/Tools/inductive_package.ML
 %%DATADIR%%/src/ZF/Tools/numeral_syntax.ML
 %%DATADIR%%/src/ZF/Tools/primrec_package.ML
+%%DATADIR%%/src/ZF/Tools/twos_compl.ML
 %%DATADIR%%/src/ZF/Tools/typechk.ML
 %%DATADIR%%/src/ZF/Trancl.thy
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@@ -3635,171 +4004,191 @@
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+%%DATADIR%%/src/ZF/int_arith.ML
 %%DATADIR%%/src/ZF/pair.thy
 %%DATADIR%%/src/ZF/simpdata.ML
-%%DATADIR%%/src/ZF/thy_syntax.ML
 %%DATADIR%%/src/ZF/upair.thy
-@dirrm share/isabelle/src/ZF/ex
-@dirrm share/isabelle/src/ZF/document
-@dirrm share/isabelle/src/ZF/UNITY
-@dirrm share/isabelle/src/ZF/Tools
-@dirrm share/isabelle/src/ZF/Resid
-@dirrm share/isabelle/src/ZF/Integ
-@dirrm share/isabelle/src/ZF/Induct/document
-@dirrm share/isabelle/src/ZF/Induct
-@dirrm share/isabelle/src/ZF/IMP/document
-@dirrm share/isabelle/src/ZF/IMP
-@dirrm share/isabelle/src/ZF/Constructible/document
-@dirrm share/isabelle/src/ZF/Constructible
-@dirrm share/isabelle/src/ZF/Coind
-@dirrm share/isabelle/src/ZF/AC/document
-@dirrm share/isabelle/src/ZF/AC
-@dirrm share/isabelle/src/ZF
-@dirrm share/isabelle/src/TFL
-@dirrm share/isabelle/src/Sequents/Modal
-@dirrm share/isabelle/src/Sequents/LK
-@dirrm share/isabelle/src/Sequents/ILL
-@dirrm share/isabelle/src/Sequents
-@dirrm share/isabelle/src/Pure/Tools
-@dirrm share/isabelle/src/Pure/Thy
-@dirrm share/isabelle/src/Pure/Syntax
-@dirrm share/isabelle/src/Pure/Proof
-@dirrm share/isabelle/src/Pure/ML-Systems
-@dirrm share/isabelle/src/Pure/Isar
-@dirrm share/isabelle/src/Pure/IsaPlanner
-@dirrm share/isabelle/src/Pure/General
-@dirrm share/isabelle/src/Pure
-@dirrm share/isabelle/src/Provers/Arith
-@dirrm share/isabelle/src/Provers
-@dirrm share/isabelle/src/LCF/ex
-@dirrm share/isabelle/src/LCF
-@dirrm share/isabelle/src/HOLCF/ex
-@dirrm share/isabelle/src/HOLCF/domain
-@dirrm share/isabelle/src/HOLCF/document
-@dirrm share/isabelle/src/HOLCF/IOA/meta_theory
-@dirrm share/isabelle/src/HOLCF/IOA/ex
-@dirrm share/isabelle/src/HOLCF/IOA/Storage
-@dirrm share/isabelle/src/HOLCF/IOA/NTP
-@dirrm share/isabelle/src/HOLCF/IOA/Modelcheck
-@dirrm share/isabelle/src/HOLCF/IOA/ABP
-@dirrm share/isabelle/src/HOLCF/IOA
-@dirrm share/isabelle/src/HOLCF/IMP/document
-@dirrm share/isabelle/src/HOLCF/IMP
-@dirrm share/isabelle/src/HOLCF/FOCUS
-@dirrm share/isabelle/src/HOLCF
-@dirrm share/isabelle/src/HOL/ex/document
-@dirrm share/isabelle/src/HOL/ex
-@dirrm share/isabelle/src/HOL/document
-@dirrm share/isabelle/src/HOL/W0/document
-@dirrm share/isabelle/src/HOL/W0
-@dirrm share/isabelle/src/HOL/Unix/document
-@dirrm share/isabelle/src/HOL/Unix
-@dirrm share/isabelle/src/HOL/UNITY/document
-@dirrm share/isabelle/src/HOL/UNITY/Simple
-@dirrm share/isabelle/src/HOL/UNITY/Comp
-@dirrm share/isabelle/src/HOL/UNITY
-@dirrm share/isabelle/src/HOL/Tools/ATP
-@dirrm share/isabelle/src/HOL/Tools
-@dirrm share/isabelle/src/HOL/TLA/Memory
-@dirrm share/isabelle/src/HOL/TLA/Inc
-@dirrm share/isabelle/src/HOL/TLA/Buffer
-@dirrm share/isabelle/src/HOL/TLA
-@dirrm share/isabelle/src/HOL/Subst
-@dirrm share/isabelle/src/HOL/SET-Protocol/document
-@dirrm share/isabelle/src/HOL/SET-Protocol
-@dirrm share/isabelle/src/HOL/Real/document
-@dirrm share/isabelle/src/HOL/Real/HahnBanach/document
-@dirrm share/isabelle/src/HOL/Real/HahnBanach
-@dirrm share/isabelle/src/HOL/Real
-@dirrm share/isabelle/src/HOL/Prolog
-@dirrm share/isabelle/src/HOL/NumberTheory/document
-@dirrm share/isabelle/src/HOL/NumberTheory
-@dirrm share/isabelle/src/HOL/NanoJava/document
-@dirrm share/isabelle/src/HOL/NanoJava
-@dirrm share/isabelle/src/HOL/Modelcheck
-@dirrm share/isabelle/src/HOL/MicroJava/document
-@dirrm share/isabelle/src/HOL/MicroJava/JVM
-@dirrm share/isabelle/src/HOL/MicroJava/J
-@dirrm share/isabelle/src/HOL/MicroJava/Comp
-@dirrm share/isabelle/src/HOL/MicroJava/BV
-@dirrm share/isabelle/src/HOL/MicroJava
-@dirrm share/isabelle/src/HOL/Matrix/document
-@dirrm share/isabelle/src/HOL/Matrix/cplex
-@dirrm share/isabelle/src/HOL/Matrix
-@dirrm share/isabelle/src/HOL/Library/Library/document
-@dirrm share/isabelle/src/HOL/Library/Library
-@dirrm share/isabelle/src/HOL/Library
-@dirrm share/isabelle/src/HOL/Lattice/document
-@dirrm share/isabelle/src/HOL/Lattice
-@dirrm share/isabelle/src/HOL/Lambda/document
-@dirrm share/isabelle/src/HOL/Lambda
-@dirrm share/isabelle/src/HOL/Isar_examples/document
-@dirrm share/isabelle/src/HOL/Isar_examples
-@dirrm share/isabelle/src/HOL/Integ
-@dirrm share/isabelle/src/HOL/Induct/document
-@dirrm share/isabelle/src/HOL/Induct
-@dirrm share/isabelle/src/HOL/Import/HOLLight
-@dirrm share/isabelle/src/HOL/Import/HOL
-@dirrm share/isabelle/src/HOL/Import/Generate-HOLLight
-@dirrm share/isabelle/src/HOL/Import/Generate-HOL
-@dirrm share/isabelle/src/HOL/Import
-@dirrm share/isabelle/src/HOL/IOA
-@dirrm share/isabelle/src/HOL/IMPP
-@dirrm share/isabelle/src/HOL/IMP/document
-@dirrm share/isabelle/src/HOL/IMP
-@dirrm share/isabelle/src/HOL/Hyperreal
-@dirrm share/isabelle/src/HOL/HoareParallel/document
-@dirrm share/isabelle/src/HOL/HoareParallel
-@dirrm share/isabelle/src/HOL/Hoare
-@dirrm share/isabelle/src/HOL/Extraction/document
-@dirrm share/isabelle/src/HOL/Extraction
-@dirrm share/isabelle/src/HOL/Complex/ex/document
-@dirrm share/isabelle/src/HOL/Complex/ex
-@dirrm share/isabelle/src/HOL/Complex/document
-@dirrm share/isabelle/src/HOL/Complex
-@dirrm share/isabelle/src/HOL/Bali/document
-@dirrm share/isabelle/src/HOL/Bali
-@dirrm share/isabelle/src/HOL/AxClasses/Lattice
-@dirrm share/isabelle/src/HOL/AxClasses
-@dirrm share/isabelle/src/HOL/Auth/document
-@dirrm share/isabelle/src/HOL/Auth/Guard
-@dirrm share/isabelle/src/HOL/Auth
-@dirrm share/isabelle/src/HOL/Algebra/poly
-@dirrm share/isabelle/src/HOL/Algebra/document
-@dirrm share/isabelle/src/HOL/Algebra/abstract
-@dirrm share/isabelle/src/HOL/Algebra
-@dirrm share/isabelle/src/HOL
-@dirrm share/isabelle/src/FOLP/ex
-@dirrm share/isabelle/src/FOLP
-@dirrm share/isabelle/src/FOL/ex/document
-@dirrm share/isabelle/src/FOL/ex
-@dirrm share/isabelle/src/FOL/document
-@dirrm share/isabelle/src/FOL
-@dirrm share/isabelle/src/Cube
-@dirrm share/isabelle/src/CTT/ex
-@dirrm share/isabelle/src/CTT
-@dirrm share/isabelle/src/CCL/ex
-@dirrm share/isabelle/src/CCL
-@dirrm share/isabelle/src
-@dirrm share/isabelle/lib/texinputs
-@dirrm share/isabelle/lib/scripts
-@dirrm share/isabelle/lib/logo
-@dirrm share/isabelle/lib/icons
-@dirrm share/isabelle/lib/html
-@dirrm share/isabelle/lib/fonts
-@dirrm share/isabelle/lib/browser/awtUtilities
-@dirrm share/isabelle/lib/browser/GraphBrowser
-@dirrm share/isabelle/lib/browser
-@dirrm share/isabelle/lib/Tools
-@dirrm share/isabelle/lib/ProofGeneral
-@dirrm share/isabelle/lib
-@dirrm share/isabelle/heaps/%%HEAPSUBDIR%%/log
-@dirrm share/isabelle/heaps/%%HEAPSUBDIR%%
-@dirrm share/isabelle/heaps
-@dirrm share/isabelle/etc
-@dirrm share/isabelle/contrib
-@dirrm share/isabelle/bin
-@dirrm share/isabelle
+@dirrm %%DATADIR%%/src/ZF/ex
+@dirrm %%DATADIR%%/src/ZF/document
+@dirrm %%DATADIR%%/src/ZF/UNITY
+@dirrm %%DATADIR%%/src/ZF/Tools
+@dirrm %%DATADIR%%/src/ZF/Resid
+@dirrm %%DATADIR%%/src/ZF/Induct/document
+@dirrm %%DATADIR%%/src/ZF/Induct
+@dirrm %%DATADIR%%/src/ZF/IMP/document
+@dirrm %%DATADIR%%/src/ZF/IMP
+@dirrm %%DATADIR%%/src/ZF/Constructible/document
+@dirrm %%DATADIR%%/src/ZF/Constructible
+@dirrm %%DATADIR%%/src/ZF/Coind
+@dirrm %%DATADIR%%/src/ZF/AC/document
+@dirrm %%DATADIR%%/src/ZF/AC
+@dirrm %%DATADIR%%/src/ZF
+@dirrm %%DATADIR%%/src/Tools/code
+@dirrm %%DATADIR%%/src/Tools/Metis/src
+@dirrm %%DATADIR%%/src/Tools/Metis/scripts
+@dirrm %%DATADIR%%/src/Tools/Metis
+@dirrm %%DATADIR%%/src/Tools/IsaPlanner
+@dirrm %%DATADIR%%/src/Tools/Compute_Oracle
+@dirrm %%DATADIR%%/src/Tools
+@dirrm %%DATADIR%%/src/Sequents/LK
+@dirrm %%DATADIR%%/src/Sequents
+@dirrm %%DATADIR%%/src/Pure/Tools
+@dirrm %%DATADIR%%/src/Pure/Thy
+@dirrm %%DATADIR%%/src/Pure/Syntax
+@dirrm %%DATADIR%%/src/Pure/ProofGeneral
+@dirrm %%DATADIR%%/src/Pure/Proof
+@dirrm %%DATADIR%%/src/Pure/ML-Systems
+@dirrm %%DATADIR%%/src/Pure/ML
+@dirrm %%DATADIR%%/src/Pure/Isar
+@dirrm %%DATADIR%%/src/Pure/General
+@dirrm %%DATADIR%%/src/Pure
+@dirrm %%DATADIR%%/src/Provers/Arith
+@dirrm %%DATADIR%%/src/Provers
+@dirrm %%DATADIR%%/src/LCF/ex
+@dirrm %%DATADIR%%/src/LCF
+@dirrm %%DATADIR%%/src/HOLCF/ex
+@dirrm %%DATADIR%%/src/HOLCF/document
+@dirrm %%DATADIR%%/src/HOLCF/Tools/domain
+@dirrm %%DATADIR%%/src/HOLCF/Tools
+@dirrm %%DATADIR%%/src/HOLCF/IOA/meta_theory
+@dirrm %%DATADIR%%/src/HOLCF/IOA/ex
+@dirrm %%DATADIR%%/src/HOLCF/IOA/Storage
+@dirrm %%DATADIR%%/src/HOLCF/IOA/NTP
+@dirrm %%DATADIR%%/src/HOLCF/IOA/Modelcheck
+@dirrm %%DATADIR%%/src/HOLCF/IOA/ABP
+@dirrm %%DATADIR%%/src/HOLCF/IOA
+@dirrm %%DATADIR%%/src/HOLCF/IMP/document
+@dirrm %%DATADIR%%/src/HOLCF/IMP
+@dirrm %%DATADIR%%/src/HOLCF/FOCUS
+@dirrm %%DATADIR%%/src/HOLCF
+@dirrm %%DATADIR%%/src/HOL/ex/document
+@dirrm %%DATADIR%%/src/HOL/ex
+@dirrm %%DATADIR%%/src/HOL/document
+@dirrm %%DATADIR%%/src/HOL/ZF/document
+@dirrm %%DATADIR%%/src/HOL/ZF
+@dirrm %%DATADIR%%/src/HOL/Word/document
+@dirrm %%DATADIR%%/src/HOL/Word/Examples
+@dirrm %%DATADIR%%/src/HOL/Word
+@dirrm %%DATADIR%%/src/HOL/W0/document
+@dirrm %%DATADIR%%/src/HOL/W0
+@dirrm %%DATADIR%%/src/HOL/Unix/document
+@dirrm %%DATADIR%%/src/HOL/Unix
+@dirrm %%DATADIR%%/src/HOL/UNITY/document
+@dirrm %%DATADIR%%/src/HOL/UNITY/Simple
+@dirrm %%DATADIR%%/src/HOL/UNITY/Comp
+@dirrm %%DATADIR%%/src/HOL/UNITY
+@dirrm %%DATADIR%%/src/HOL/Tools/function_package
+@dirrm %%DATADIR%%/src/HOL/Tools/TFL
+@dirrm %%DATADIR%%/src/HOL/Tools/Qelim
+@dirrm %%DATADIR%%/src/HOL/Tools/Groebner_Basis
+@dirrm %%DATADIR%%/src/HOL/Tools
+@dirrm %%DATADIR%%/src/HOL/TLA/Memory
+@dirrm %%DATADIR%%/src/HOL/TLA/Inc
+@dirrm %%DATADIR%%/src/HOL/TLA/Buffer
+@dirrm %%DATADIR%%/src/HOL/TLA
+@dirrm %%DATADIR%%/src/HOL/Subst
+@dirrm %%DATADIR%%/src/HOL/Statespace/document
+@dirrm %%DATADIR%%/src/HOL/Statespace
+@dirrm %%DATADIR%%/src/HOL/SizeChange/document
+@dirrm %%DATADIR%%/src/HOL/SizeChange
+@dirrm %%DATADIR%%/src/HOL/SET-Protocol/document
+@dirrm %%DATADIR%%/src/HOL/SET-Protocol
+@dirrm %%DATADIR%%/src/HOL/Real/HahnBanach/document
+@dirrm %%DATADIR%%/src/HOL/Real/HahnBanach
+@dirrm %%DATADIR%%/src/HOL/Real
+@dirrm %%DATADIR%%/src/HOL/Prolog
+@dirrm %%DATADIR%%/src/HOL/NumberTheory/document
+@dirrm %%DATADIR%%/src/HOL/NumberTheory
+@dirrm %%DATADIR%%/src/HOL/Nominal/Examples
+@dirrm %%DATADIR%%/src/HOL/Nominal
+@dirrm %%DATADIR%%/src/HOL/NanoJava/document
+@dirrm %%DATADIR%%/src/HOL/NanoJava
+@dirrm %%DATADIR%%/src/HOL/Modelcheck
+@dirrm %%DATADIR%%/src/HOL/MicroJava/document
+@dirrm %%DATADIR%%/src/HOL/MicroJava/JVM
+@dirrm %%DATADIR%%/src/HOL/MicroJava/J
+@dirrm %%DATADIR%%/src/HOL/MicroJava/Comp
+@dirrm %%DATADIR%%/src/HOL/MicroJava/BV
+@dirrm %%DATADIR%%/src/HOL/MicroJava
+@dirrm %%DATADIR%%/src/HOL/MetisExamples
+@dirrm %%DATADIR%%/src/HOL/Matrix/document
+@dirrm %%DATADIR%%/src/HOL/Matrix/cplex
+@dirrm %%DATADIR%%/src/HOL/Matrix
+@dirrm %%DATADIR%%/src/HOL/Library/Library/document
+@dirrm %%DATADIR%%/src/HOL/Library/Library
+@dirrm %%DATADIR%%/src/HOL/Library
+@dirrm %%DATADIR%%/src/HOL/Lattice/document
+@dirrm %%DATADIR%%/src/HOL/Lattice
+@dirrm %%DATADIR%%/src/HOL/Lambda/document
+@dirrm %%DATADIR%%/src/HOL/Lambda
+@dirrm %%DATADIR%%/src/HOL/Isar_examples/document
+@dirrm %%DATADIR%%/src/HOL/Isar_examples
+@dirrm %%DATADIR%%/src/HOL/Induct/document
+@dirrm %%DATADIR%%/src/HOL/Induct
+@dirrm %%DATADIR%%/src/HOL/Import/HOLLight
+@dirrm %%DATADIR%%/src/HOL/Import/HOL
+@dirrm %%DATADIR%%/src/HOL/Import/Generate-HOLLight
+@dirrm %%DATADIR%%/src/HOL/Import/Generate-HOL
+@dirrm %%DATADIR%%/src/HOL/Import
+@dirrm %%DATADIR%%/src/HOL/IOA
+@dirrm %%DATADIR%%/src/HOL/IMPP
+@dirrm %%DATADIR%%/src/HOL/IMP/document
+@dirrm %%DATADIR%%/src/HOL/IMP
+@dirrm %%DATADIR%%/src/HOL/Hyperreal
+@dirrm %%DATADIR%%/src/HOL/HoareParallel/document
+@dirrm %%DATADIR%%/src/HOL/HoareParallel
+@dirrm %%DATADIR%%/src/HOL/Hoare/document
+@dirrm %%DATADIR%%/src/HOL/Hoare
+@dirrm %%DATADIR%%/src/HOL/Extraction/document
+@dirrm %%DATADIR%%/src/HOL/Extraction
+@dirrm %%DATADIR%%/src/HOL/Complex/ex/document
+@dirrm %%DATADIR%%/src/HOL/Complex/ex
+@dirrm %%DATADIR%%/src/HOL/Complex/document
+@dirrm %%DATADIR%%/src/HOL/Complex
+@dirrm %%DATADIR%%/src/HOL/Bali/document
+@dirrm %%DATADIR%%/src/HOL/Bali
+@dirrm %%DATADIR%%/src/HOL/AxClasses/Lattice
+@dirrm %%DATADIR%%/src/HOL/AxClasses
+@dirrm %%DATADIR%%/src/HOL/Auth/document
+@dirrm %%DATADIR%%/src/HOL/Auth/Smartcard
+@dirrm %%DATADIR%%/src/HOL/Auth/Guard
+@dirrm %%DATADIR%%/src/HOL/Auth
+@dirrm %%DATADIR%%/src/HOL/Algebra/poly
+@dirrm %%DATADIR%%/src/HOL/Algebra/document
+@dirrm %%DATADIR%%/src/HOL/Algebra/abstract
+@dirrm %%DATADIR%%/src/HOL/Algebra
+@dirrm %%DATADIR%%/src/HOL
+@dirrm %%DATADIR%%/src/FOLP/ex
+@dirrm %%DATADIR%%/src/FOLP
+@dirrm %%DATADIR%%/src/FOL/ex/document
+@dirrm %%DATADIR%%/src/FOL/ex
+@dirrm %%DATADIR%%/src/FOL/document
+@dirrm %%DATADIR%%/src/FOL
+@dirrm %%DATADIR%%/src/Cube
+@dirrm %%DATADIR%%/src/CTT/ex
+@dirrm %%DATADIR%%/src/CTT
+@dirrm %%DATADIR%%/src/CCL/ex
+@dirrm %%DATADIR%%/src/CCL
+@dirrm %%DATADIR%%/src
+@dirrm %%DATADIR%%/lib/texinputs
+@dirrm %%DATADIR%%/lib/scripts
+@dirrm %%DATADIR%%/lib/logo
+@dirrm %%DATADIR%%/lib/jedit
+@dirrm %%DATADIR%%/lib/icons
+@dirrm %%DATADIR%%/lib/html
+@dirrm %%DATADIR%%/lib/browser/awtUtilities
+@dirrm %%DATADIR%%/lib/browser/GraphBrowser
+@dirrm %%DATADIR%%/lib/browser
+@dirrm %%DATADIR%%/lib/Tools
+@dirrm %%DATADIR%%/lib/ProofGeneral
+@dirrm %%DATADIR%%/lib
+@dirrm %%DATADIR%%/heaps/%%HEAPSUBDIR%%/log
+@dirrm %%DATADIR%%/heaps/%%HEAPSUBDIR%%
+@dirrm %%DATADIR%%/heaps
+@dirrm %%DATADIR%%/etc
+@dirrm %%DATADIR%%/contrib
+@dirrm %%DATADIR%%/bin
+@dirrm %%DATADIR%%
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/ZF/ex/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/ZF/ex
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/ZF/UNITY/.session
@@ -3818,14 +4207,12 @@
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/ZF/AC
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/ZF/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/ZF
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/Sequents/Modal/.session
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/Sequents/Modal
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/Sequents/LK/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/Sequents/LK
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/Sequents/ILL/.session
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/Sequents/ILL
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/Sequents/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/Sequents
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/ProofGeneral/.session
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/ProofGeneral
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/LCF/ex/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/LCF/ex
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/LCF/.session
@@ -3852,6 +4239,8 @@
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOLCF
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/ex/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/ex
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/ZF/.session
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/ZF
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/W0/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/W0
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Unix/.session
@@ -3868,6 +4257,10 @@
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/TLA
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Subst/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Subst
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Statespace/.session
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Statespace
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/SizeChange/.session
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/SizeChange
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/SET-Protocol/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/SET-Protocol
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Prolog/.session
@@ -3880,6 +4273,8 @@
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Modelcheck
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/MicroJava/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/MicroJava
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/MetisExamples/.session
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/MetisExamples
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Library/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Library
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Lattice/.session
@@ -3900,6 +4295,14 @@
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HoareParallel
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Hoare/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/Hoare
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Word/Examples/.session
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Word/Examples
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Word/.session
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Word
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Nominal/Examples/.session
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Nominal/Examples
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Nominal/.session
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Nominal
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Complex/ex/.session
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Complex/ex
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/browser_info/HOL/HOL-Complex/Import/.session
Index: files/patch-bin-isabelle_process
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-bin-isabelle_process,v
retrieving revision 1.1
diff -u -r1.1 patch-bin-isabelle_process
--- files/patch-bin-isabelle_process	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-bin-isabelle_process	23 Feb 2008 11:15:40 -0000
@@ -1,10 +1,10 @@
---- ./bin/isabelle-process.orig	Sun Sep  2 15:23:58 2007
-+++ ./bin/isabelle-process	Sun Sep  2 16:05:51 2007
+--- bin/isabelle-process.orig	Sat Jan 12 16:42:22 2008
++++ bin/isabelle-process	Sat Jan 12 16:42:58 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: isabelle-process,v 1.13 2005/07/19 15:21:45 wenzelm Exp $
+ # $Id: isabelle-process,v 1.17 2006/12/04 20:33:36 aspinall Exp $
  # Author: Markus Wenzel, TU Muenchen
 @@ -16,12 +16,12 @@
  PRG="$(basename "$0")"
@@ -21,7 +21,7 @@
  {
    echo
    echo "Usage: $PRG [OPTIONS] [INPUT] [OUTPUT]"
-@@ -48,7 +48,7 @@
+@@ -49,7 +49,7 @@
    exit 1
  }
  
Index: files/patch-build
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-build,v
retrieving revision 1.1
diff -u -r1.1 patch-build
--- files/patch-build	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-build	23 Feb 2008 11:15:40 -0000
@@ -1,10 +1,10 @@
---- build.orig	Mon Sep 26 21:12:24 2005
-+++ build	Sun Sep  2 19:02:32 2007
+--- build.orig	Sat Jan 12 16:44:25 2008
++++ build	Sat Jan 12 16:46:08 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: build,v 1.35 2005/09/26 11:12:24 wenzelm Exp $
+ # $Id: build,v 1.36 2005/12/01 17:41:46 wenzelm Exp $
  # Author: Markus Wenzel, TU Muenchen
 @@ -23,12 +23,12 @@
  PRG="$(basename "$0")"
@@ -30,12 +30,3 @@
  {
    echo "$1" >&2
    exit 2
-@@ -169,7 +169,7 @@
- 
- # build it
- 
--SECONDS=0
-+SECONDS=$(( `date +'%j * 86400 + %H * 3600 + %M * 60 + %S'` ))
- echo "Started at $(date) ($ML_IDENTIFIER on $(hostname))"
- 
- for L in $MAKE_LOGICS
Index: files/patch-etc-settings
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-etc-settings,v
retrieving revision 1.3
diff -u -r1.3 patch-etc-settings
--- files/patch-etc-settings	22 Mar 2007 11:32:00 -0000	1.3
+++ files/patch-etc-settings	23 Feb 2008 11:15:44 -0000
@@ -1,10 +1,10 @@
---- etc/settings.orig	Thu Nov 24 21:53:10 2005
-+++ etc/settings	Thu Nov 24 22:07:36 2005
-@@ -16,33 +16,11 @@
+--- etc/settings.orig	Sat Jan 12 16:47:09 2008
++++ etc/settings	Sat Jan 12 16:56:24 2008
+@@ -16,60 +16,27 @@
  # not invent new ML system names unless you know what you are doing.
  # Only one of the sections below should be activated.
  
--# Poly/ML 4.x
+-# Poly/ML 4.x/5.x (automated settings)
 -POLY_HOME="$(type -p poly)"; [ -n "$POLY_HOME" ] && POLY_HOME="$(dirname "$POLY_HOME")"
 -ML_PLATFORM=$("$ISABELLE_HOME/lib/scripts/polyml-platform")
 -ML_HOME=$(choosefrom \
@@ -15,31 +15,61 @@
 -  "/opt/polyml/$ML_PLATFORM" \
 -  $POLY_HOME)
 -ML_SYSTEM=$("$ISABELLE_HOME/lib/scripts/polyml-version")
--ML_OPTIONS="-H 80"
+-ML_OPTIONS="-H 500"
 -ML_DBASE=""
 -
--# Standard ML of New Jersey 110 or later
--#SMLNJ_CYGWIN_RUNTIME=1
+-# Poly/ML 5.1
+-#ML_PLATFORM=x86-linux
+-#ML_HOME=/usr/local/polyml/x86-linux
+-#ML_SYSTEM=polyml-5.1
+-#ML_OPTIONS="-H 500"
+-
+-# Poly/ML 5.1 (64 bit)
+-#ML_PLATFORM=x86_64-linux
+-#ML_HOME=/usr/local/polyml/x86_64-linux
+-#ML_SYSTEM=polyml-5.1
+-#ML_OPTIONS="-H 1000"
+-
+-# Poly/ML 4.2.0
+-#ML_PLATFORM=x86-linux
+-#ML_HOME=/usr/local/polyml/x86-linux
+-#ML_SYSTEM=polyml-4.2.0
+-#ML_OPTIONS="-H 80"
+-
+-# Standard ML of New Jersey (slow!)
 -#ML_SYSTEM=smlnj-110
--#ML_HOME="$ISABELLE_HOME/contrib/smlnj/bin"
+-#ML_HOME="/usr/local/smlnj/bin"
 -#ML_OPTIONS="@SMLdebug=/dev/null"
 -#ML_PLATFORM=$(eval $("$ML_HOME/.arch-n-opsys" 2>/dev/null); echo "$HEAP_SUFFIX")
--
--# Moscow ML 2.00 or later (experimental!)
--#ML_SYSTEM=mosml
--#ML_HOME="$ISABELLE_HOME/contrib/mosml/bin"
--#ML_PLATFORM=""
--#ML_OPTIONS=""
--
+-#SMLNJ_CYGWIN_RUNTIME=1
 +ML_SYSTEM=%%ML_SYSTEM%%
 +ML_HOME=%%ML_HOME%%
 +ML_OPTIONS=%%ML_OPTIONS%%
 +ML_PLATFORM=%%ML_PLATFORM%%
 +ML_DBASE=%%ML_DBASE%%
  
- ###
- ### Compilation options (cf. isatool usedir)
-@@ -116,7 +94,7 @@
+ # Moscow ML 2.00 (experimental!)
+ #ML_SYSTEM=mosml
+-#ML_HOME="/usr/local/mosml/bin"
++#ML_HOME="%%PREFIX%%/bin"
+ #ML_OPTIONS=""
+ #ML_PLATFORM=""
+ 
+ # Alice 1.4 (experimental!)
+ #ML_SYSTEM=alice
+-#ML_HOME="/usr/local/alice/bin"
++#ML_HOME="%%PREFIX%%/bin"
+ #ML_OPTIONS=""
+ #ML_PLATFORM=""
+ 
+ # Poplog/PML version 15.6/2.1 (experimental!)
+ #ML_SYSTEM=poplogml
+-#ML_HOME="/usr/local/poplog/current-poplog/bin"
++#ML_HOME="%%PREFIX%%/bin"
+ #ML_OPTIONS="-noinit"
+ #ML_SUFFIX=".psv"
+ #ML_PLATFORM=""
+@@ -155,7 +122,7 @@
  ###
  
  # Where to look for docs (multiple dirs separated by ':').
@@ -48,11 +78,54 @@
  
  # Preferred document format
  ISABELLE_DOC_FORMAT=pdf
-@@ -152,6 +130,7 @@
-   "/usr/share/ProofGeneral/isar/interface" \
-   "/opt/ProofGeneral/isar/interface" \
-   "/usr/share/emacs/ProofGeneral/isar/interface" \
+@@ -190,6 +157,7 @@
+ 
+ # Proof General path, look in a variety of places
+ ISABELLE_INTERFACE=$(choosefrom \
 +  "%%PREFIX%%/bin/proofgeneral" \
-   "$ISABELLE_INTERFACE")
+   "$ISABELLE_HOME/contrib/ProofGeneral/isar/interface" \
+   "$ISABELLE_HOME/../ProofGeneral/isar/interface" \
+   "/usr/local/ProofGeneral/isar/interface" \
+@@ -223,26 +191,26 @@
+ #SVC_MACHINE=sparc-sun-solaris
+ 
+ # Mucke (mu-calculus model checker)
+-#MUCKE_HOME=/usr/local/bin
++#MUCKE_HOME=%%PREFIX%%/bin
+ 
+ # Einhoven model checker
+-#EINDHOVEN_HOME=/usr/local/bin
++#EINDHOVEN_HOME=%%PREFIX%%/bin
+ 
+ # MiniSat 1.14 (SAT Solver, cf. Isabelle/src/HOL/Tools/sat_solver.ML)
+-#MINISAT_HOME=/usr/local/bin
++#MINISAT_HOME=%%PREFIX%%/bin
+ 
+ # zChaff (SAT Solver, cf. Isabelle/src/HOL/Tools/sat_solver.ML)
+-#ZCHAFF_HOME=/usr/local/bin
++#ZCHAFF_HOME=%%PREFIX%%/bin
+ #ZCHAFF_VERSION=2004.5.13
+ #ZCHAFF_VERSION=2004.11.15
+ 
+ # BerkMin561 (SAT Solver, cf. Isabelle/src/HOL/Tools/sat_solver.ML)
+-#BERKMIN_HOME=/usr/local/bin
++#BERKMIN_HOME=%%PREFIX%%/bin
+ #BERKMIN_EXE=BerkMin561-linux
+ #BERKMIN_EXE=BerkMin561-solaris
+ 
+ # Jerusat 1.3 (SAT Solver, cf. Isabelle/src/HOL/Tools/sat_solver.ML)
+-#JERUSAT_HOME=/usr/local/bin
++#JERUSAT_HOME=%%PREFIX%%/bin
+ 
+ # For configuring HOL/Matrix/cplex
+ # LP_SOLVER is the default solver. It can be changed during runtime via Cplex.set_solver.
+@@ -254,6 +222,6 @@
+ #GLPK_PATH=glpsol
  
- PROOFGENERAL_OPTIONS=""
+ # External provers
+-E_HOME=$(choosefrom "$ISABELLE_HOME/contrib/E/$ML_PLATFORM" "/usr/local/E" "")
+-VAMPIRE_HOME=$(choosefrom "$ISABELLE_HOME/contrib/vampire/$ML_PLATFORM" "/usr/local/Vampire" "")
+-SPASS_HOME=$(choosefrom "$ISABELLE_HOME/contrib/spass/$ML_PLATFORM/bin" "/usr/local/SPASS" "")
++E_HOME=$(choosefrom "$ISABELLE_HOME/contrib/E/$ML_PLATFORM" "%%PREFIX%%/E" "")
++VAMPIRE_HOME=$(choosefrom "$ISABELLE_HOME/contrib/vampire/$ML_PLATFORM" "%%PREFIX%%/Vampire" "")
++SPASS_HOME=$(choosefrom "$ISABELLE_HOME/contrib/spass/$ML_PLATFORM/bin" "%%PREFIX%%/SPASS" "")
Index: files/patch-lib-Tools-browser
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-Tools-browser,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-Tools-browser
--- files/patch-lib-Tools-browser	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-Tools-browser	23 Feb 2008 11:15:44 -0000
@@ -1,10 +1,10 @@
---- ./lib/Tools/browser.orig	Sun Sep  2 15:11:55 2007
-+++ ./lib/Tools/browser	Sun Sep  2 15:47:49 2007
+--- lib/Tools/browser.orig	Sat Jan 12 16:56:56 2008
++++ lib/Tools/browser	Sat Jan 12 16:58:42 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: browser,v 1.16 2004/06/21 08:25:57 kleing Exp $
+ # $Id: browser,v 1.17 2006/09/18 17:12:41 wenzelm Exp $
  # Author: Markus Wenzel, TU Muenchen
 @@ -8,7 +8,7 @@
  
Index: files/patch-lib-Tools-codegen
===================================================================
RCS file: files/patch-lib-Tools-codegen
diff -N files/patch-lib-Tools-codegen
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-Tools-codegen	23 Feb 2008 11:15:44 -0000
@@ -0,0 +1,17 @@
+--- lib/Tools/codegen.orig	Sat Jan 12 17:19:17 2008
++++ lib/Tools/codegen	Sat Jan 12 17:19:37 2008
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env bash
++#!/bin/sh
+ #
+ # $Id: codegen,v 1.5 2007/11/21 13:18:23 haftmann Exp $
+ # Author: Florian Haftmann, TUM
+@@ -10,7 +10,7 @@
+ 
+ PRG="$(basename "$0")"
+ 
+-function usage()
++usage()
+ {
+   echo
+   echo "Usage: $PRG IMAGE THY SERI"
Index: files/patch-lib-Tools-display
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-Tools-display,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-Tools-display
--- files/patch-lib-Tools-display	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-Tools-display	23 Feb 2008 11:15:44 -0000
@@ -1,10 +1,10 @@
---- ./lib/Tools/display.orig	Sun Sep  2 15:11:55 2007
-+++ ./lib/Tools/display	Sun Sep  2 15:48:09 2007
+--- lib/Tools/display.orig	Sat Jan 12 16:57:02 2008
++++ lib/Tools/display	Sat Jan 12 17:00:11 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: display,v 1.8 2005/04/13 16:48:19 wenzelm Exp $
+ # $Id: display,v 1.10 2006/11/13 17:19:24 wenzelm Exp $
  # Author: Markus Wenzel, TU Muenchen
 @@ -8,7 +8,7 @@
  
Index: files/patch-lib-Tools-findlogics
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-Tools-findlogics,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-Tools-findlogics
--- files/patch-lib-Tools-findlogics	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-Tools-findlogics	23 Feb 2008 11:15:44 -0000
@@ -1,10 +1,10 @@
---- ./lib/Tools/findlogics.orig	Sun Sep  2 15:11:55 2007
-+++ ./lib/Tools/findlogics	Sun Sep  2 15:48:27 2007
+--- lib/Tools/findlogics.orig	Sat Jan 12 16:57:07 2008
++++ lib/Tools/findlogics	Sat Jan 12 17:00:42 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: findlogics,v 1.8 2004/06/21 08:25:57 kleing Exp $
+ # $Id: findlogics,v 1.9 2005/10/08 18:15:31 wenzelm Exp $
  # Author: Markus Wenzel, TU Muenchen
 @@ -8,7 +8,7 @@
  
Index: files/patch-lib-Tools-keywords
===================================================================
RCS file: files/patch-lib-Tools-keywords
diff -N files/patch-lib-Tools-keywords
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-Tools-keywords	23 Feb 2008 11:15:44 -0000
@@ -0,0 +1,17 @@
+--- lib/Tools/keywords.orig	Sat Jan 12 17:16:34 2008
++++ lib/Tools/keywords	Sat Jan 12 17:17:21 2008
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env bash
++#!/bin/sh
+ #
+ # $Id: keywords,v 1.3 2007/10/07 11:32:15 wenzelm Exp $
+ # Author: Makarius
+@@ -10,7 +10,7 @@
+ 
+ PRG="$(basename "$0")"
+ 
+-function usage()
++usage()
+ {
+   echo
+   echo "Usage: $PRG [OPTIONS] [LOGS ...]"
Index: files/patch-lib-Tools-makeall
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-Tools-makeall,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-Tools-makeall
--- files/patch-lib-Tools-makeall	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-Tools-makeall	23 Feb 2008 11:15:44 -0000
@@ -1,23 +1,21 @@
---- lib/Tools/makeall.orig	Wed Apr 27 03:50:14 2005
-+++ lib/Tools/makeall	Sun Sep  2 19:04:36 2007
+--- lib/Tools/makeall.orig	Sat Jan 12 16:57:16 2008
++++ lib/Tools/makeall	Sat Jan 12 17:01:23 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: makeall,v 1.19 2005/04/26 17:50:14 wenzelm Exp $
+ # $Id: makeall,v 1.20 2005/12/01 17:41:46 wenzelm Exp $
  # Author: Markus Wenzel, TU Muenchen
-@@ -13,8 +13,9 @@
- ## diagnostics
+@@ -14,7 +14,7 @@
  
  PRG="$(basename "$0")"
-+SECONDS=$(( `date +'%j * 86400 + %H * 3600 + %M * 60 + %S'` ))
  
 -function usage()
 +usage()
  {
    echo
    echo "Usage: $PRG [ARGS ...]"
-@@ -24,7 +25,7 @@
+@@ -24,7 +24,7 @@
    exit 1
  }
  
Index: files/patch-lib-Tools-mkdir
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-Tools-mkdir,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-Tools-mkdir
--- files/patch-lib-Tools-mkdir	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-Tools-mkdir	23 Feb 2008 11:15:44 -0000
@@ -1,10 +1,10 @@
---- ./lib/Tools/mkdir.orig	Sun Sep  2 15:11:55 2007
-+++ ./lib/Tools/mkdir	Sun Sep  2 15:49:15 2007
+--- lib/Tools/mkdir.orig	Sat Jan 12 16:57:23 2008
++++ lib/Tools/mkdir	Sat Jan 12 17:02:14 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: mkdir,v 1.42 2005/06/20 20:13:55 wenzelm Exp $
+ # $Id: mkdir,v 1.45 2007/11/12 10:18:51 wenzelm Exp $
  # Author: Markus Wenzel, TU Muenchen
 @@ -10,7 +10,7 @@
  
Index: files/patch-lib-Tools-mkproject
===================================================================
RCS file: files/patch-lib-Tools-mkproject
diff -N files/patch-lib-Tools-mkproject
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-Tools-mkproject	23 Feb 2008 11:15:44 -0000
@@ -0,0 +1,17 @@
+--- lib/Tools/mkproject.orig	Sat Jan 12 17:18:15 2008
++++ lib/Tools/mkproject	Sat Jan 12 17:18:41 2008
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env bash
++#!/bin/sh
+ #
+ # $Id: mkproject,v 1.2 2007/08/09 17:19:23 wenzelm Exp $
+ # Author: David Aspinall and Makarius Wenzel
+@@ -7,7 +7,7 @@
+ 
+ PRG="$(basename "$0")"
+ 
+-function usage()
++usage()
+ {
+   echo
+   echo "Usage: $PRG NAME"
Index: files/patch-lib-Tools-usedir
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-Tools-usedir,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-Tools-usedir
--- files/patch-lib-Tools-usedir	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-Tools-usedir	23 Feb 2008 11:15:44 -0000
@@ -1,10 +1,10 @@
---- lib/Tools/usedir.orig	Wed Aug 31 23:46:31 2005
-+++ lib/Tools/usedir	Sun Sep  2 19:04:54 2007
+--- lib/Tools/usedir.orig	Sat Jan 12 16:57:29 2008
++++ lib/Tools/usedir	Sat Jan 12 17:03:34 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: usedir,v 1.60 2005/08/31 13:46:31 wenzelm Exp $
+ # $Id: usedir,v 1.67 2007/10/30 09:52:26 haftmann Exp $
  # Author: Markus Wenzel, TU Muenchen
 @@ -10,7 +10,7 @@
  
@@ -15,7 +15,7 @@
  {
    echo
    echo "Usage: $PRG [OPTIONS] LOGIC NAME"
-@@ -40,18 +40,18 @@
+@@ -43,18 +43,18 @@
    exit 1
  }
  
@@ -37,7 +37,7 @@
  {
    [ -n "$1" -a -z "$(echo "$1" | tr -d '[0-9]')" ] || fail "Bad number: \"$1\""
  }
-@@ -77,7 +77,7 @@
+@@ -82,7 +82,7 @@
  PROOFS=0
  VERBOSE=false
  
@@ -45,13 +45,4 @@
 +getoptions()
  {
    OPTIND=1
-   while getopts "C:D:P:V:bc:d:f:g:i:m:p:rs:v:" OPT
-@@ -198,7 +198,7 @@
- fi
- 
- 
--SECONDS=0
-+SECONDS=$(( `date +'%j * 86400 + %H * 3600 + %M * 60 + %S'` ))
- 
- if [ -n "$BUILD" ]; then
-   ITEM="$SESSION"
+   while getopts "C:D:M:P:T:V:bc:d:f:g:i:m:p:rs:v:" OPT
Index: files/patch-lib-Tools-version
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-Tools-version,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-Tools-version
--- files/patch-lib-Tools-version	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-Tools-version	23 Feb 2008 11:15:44 -0000
@@ -1,5 +1,5 @@
---- ./lib/Tools/version.orig	Sun Sep  2 15:11:55 2007
-+++ ./lib/Tools/version	Sun Sep  2 15:49:33 2007
+--- lib/Tools/version.orig	Sat Jan 12 16:57:34 2008
++++ lib/Tools/version	Sat Jan 12 17:03:48 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
Index: files/patch-lib-scripts-configure
===================================================================
RCS file: files/patch-lib-scripts-configure
diff -N files/patch-lib-scripts-configure
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-scripts-configure	23 Feb 2008 11:15:44 -0000
@@ -0,0 +1,15 @@
+--- lib/scripts/configure.orig	Fri Sep 14 18:00:10 2007
++++ lib/scripts/configure	Fri Sep 14 18:00:21 2007
+@@ -8,11 +8,5 @@
+ ## patch scripts
+ 
+ cd "`dirname "$0"`"
++exec sh lib/scripts/patch-scripts.bash
+ 
+-if bash -c :
+-then
+-  bash lib/scripts/patch-scripts.bash
+-else
+-  echo "FATAL ERROR: bash not found!"
+-  exit 2
+-fi
Index: files/patch-lib-scripts-fileindent
===================================================================
RCS file: files/patch-lib-scripts-fileindent
diff -N files/patch-lib-scripts-fileindent
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-scripts-fileindent	23 Feb 2008 11:15:44 -0000
@@ -0,0 +1,8 @@
+--- lib/scripts/fileident.orig	Sat Jan 12 17:20:26 2008
++++ lib/scripts/fileident	Sat Jan 12 17:20:38 2008
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env bash
++#!/bin/sh
+ #
+ # $Id: fileident,v 1.1 2007/07/17 20:51:27 wenzelm Exp $
+ #
Index: files/patch-lib-scripts-getsettings
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-scripts-getsettings,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-scripts-getsettings
--- files/patch-lib-scripts-getsettings	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-scripts-getsettings	23 Feb 2008 11:15:44 -0000
@@ -1,15 +1,6 @@
---- ./lib/scripts/getsettings.orig	Sun Sep  2 15:59:52 2007
-+++ ./lib/scripts/getsettings	Sun Sep  2 16:03:07 2007
-@@ -2,7 +2,7 @@
- # $Id: getsettings,v 1.24 2005/06/06 07:28:28 kleing Exp $
- # Author: Markus Wenzel, TU Muenchen
- #
--# getsettings - bash source script to augment current env.
-+# getsettings - sh source script to augment current env.
- 
- if [ -z "$ISABELLE_SETTINGS_PRESENT" ]
- then
-@@ -24,10 +24,9 @@
+--- lib/scripts/getsettings.orig	Sat Jan 12 17:08:58 2008
++++ lib/scripts/getsettings	Sat Jan 12 17:10:17 2008
+@@ -27,10 +27,9 @@
  
  #users tend to put strange things in here ...
  unset ENV
@@ -21,7 +12,7 @@
  {
    local RESULT=""
    local FILE=""
-@@ -42,13 +41,13 @@
+@@ -45,13 +44,13 @@
  }
  
  #get actual settings
@@ -35,5 +26,5 @@
 -  { source "$ISABELLE_HOME_USER/etc/settings" || exit 2; }
 +  { . "$ISABELLE_HOME_USER/etc/settings" || exit 2; }
  
- #append ML system identifier to paths
+ #ML system identifier
  if [ -z "$ML_PLATFORM" ]; then
Index: files/patch-lib-scripts-polyml_platform
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-scripts-polyml_platform,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-scripts-polyml_platform
--- files/patch-lib-scripts-polyml_platform	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-scripts-polyml_platform	23 Feb 2008 11:15:44 -0000
@@ -1,8 +1,8 @@
---- ./lib/scripts/polyml-platform.orig	Sun Sep  2 15:13:40 2007
-+++ ./lib/scripts/polyml-platform	Sun Sep  2 15:54:17 2007
+--- lib/scripts/polyml-platform.orig	Sat Jan 12 17:09:07 2008
++++ lib/scripts/polyml-platform	Sat Jan 12 17:11:51 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: polyml-platform,v 1.1 2005/08/01 17:20:48 wenzelm Exp $
+ # $Id: polyml-platform,v 1.6 2007/11/08 19:07:58 wenzelm Exp $
  #
Index: files/patch-lib-scripts-polyml_version
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-scripts-polyml_version,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-scripts-polyml_version
--- files/patch-lib-scripts-polyml_version	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-scripts-polyml_version	23 Feb 2008 11:15:44 -0000
@@ -1,8 +1,8 @@
---- ./lib/scripts/polyml-version.orig	Sun Sep  2 15:13:40 2007
-+++ ./lib/scripts/polyml-version	Sun Sep  2 15:54:22 2007
+--- lib/scripts/polyml-version.orig	Sat Jan 12 17:09:13 2008
++++ lib/scripts/polyml-version	Sat Jan 12 17:15:41 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: polyml-version,v 1.2 2005/09/15 15:18:57 wenzelm Exp $
+ # $Id: polyml-version,v 1.5 2006/12/05 17:32:54 wenzelm Exp $
  #
Index: files/patch-lib-scripts-run_polyml
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-scripts-run_polyml,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-scripts-run_polyml
--- files/patch-lib-scripts-run_polyml	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-scripts-run_polyml	23 Feb 2008 11:15:44 -0000
@@ -1,15 +1,30 @@
---- lib/scripts/run-polyml.orig	Tue Aug 16 21:42:17 2005
-+++ lib/scripts/run-polyml	Sun Sep  2 17:17:10 2007
-@@ -1,22 +1,36 @@
--#!/usr/bin/env bash
-+#!/bin/sh
- #
- # $Id: run-polyml,v 1.38 2005/08/16 11:42:17 wenzelm Exp $
- # Author: Markus Wenzel, TU Muenchen
+--- lib/scripts/run-polyml.orig	Sun Oct 21 04:31:50 2007
++++ lib/scripts/run-polyml	Sat Jan 12 18:01:17 2008
+@@ -5,18 +5,15 @@
  #
  # Poly/ML startup script.
  
 -export -n INFILE OUTFILE COPYDB COMPRESS MLTEXT TERMINATE NOWRITE
+-
+-
+ ## diagnostics
+ 
+-function fail_out()
++fail_out()
+ {
+   echo "Unable to create output heap file: \"$OUTFILE\"" >&2
+   exit 2
+ }
+ 
+-function check_file()
++check_file()
+ {
+   if [ ! -f "$1" ]; then
+     echo "Unable to locate $1" >&2
+@@ -25,6 +22,21 @@
+   fi
+ }
+ 
 +SAVE_INFILE="$INFILE"
 +SAVE_OUTFILE="$OUTFILE"
 +SAVE_COPYDB="$COPYDB"
@@ -26,32 +41,5 @@
 +TERMINATE="$SAVE_TERMINATE"
 +NOWRITE="$SAVE_NOWRITE"
  
- 
- ## diagnostics
- 
--function fail_out()
-+fail_out()
- {
-   echo "Unable to create output heap file: \"$OUTFILE\"" >&2
-   exit 2
- }
- 
--function check_file()
-+check_file()
- {
-   if [ ! -f "$1" ]; then
-     echo "Unable to locate $1" >&2
-@@ -35,11 +49,11 @@
-   *-cygwin)
-     ML_DBASE_SUFFIX=".pmd"
-     POLY="$ML_HOME/PolyML.exe"
--    function fixpath () { cygpath -m "$@"; }
-+    fixpath () { cygpath -m "$@"; }
-     ;;
-   *)
-     POLY="$ML_HOME/poly"
--    function fixpath () { echo -n "$@"; }
-+    fixpath () { echo -n "$@"; }
-     ;;
- esac
+ ## Poly/ML executable and database
  
Index: files/patch-lib-scripts-run_polyml_5.0
===================================================================
RCS file: files/patch-lib-scripts-run_polyml_5.0
diff -N files/patch-lib-scripts-run_polyml_5.0
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-scripts-run_polyml_5.0	23 Feb 2008 11:15:46 -0000
@@ -0,0 +1,50 @@
+--- lib/scripts/run-polyml-5.0.orig	Sun Oct 21 04:32:23 2007
++++ lib/scripts/run-polyml-5.0	Sat Jan 12 18:01:28 2008
+@@ -1,22 +1,20 @@
+-#!/usr/bin/env bash
++#!/bin/sh
+ #
+ # $Id: run-polyml-5.0,v 1.9 2007/10/20 18:32:23 wenzelm Exp $
+ # Author: Makarius
+ #
+ # Poly/ML startup script (for 5.0)
+ 
+-export -n INFILE OUTFILE COPYDB COMPRESS MLTEXT TERMINATE NOWRITE
+-
+ 
+ ## diagnostics
+ 
+-function fail_out()
++fail_out()
+ {
+   echo "Unable to create output heap file: \"$OUTFILE\"" >&2
+   exit 2
+ }
+ 
+-function check_file()
++check_file()
+ {
+   if [ ! -f "$1" ]; then
+     echo "Unable to locate $1" >&2
+@@ -25,6 +23,21 @@
+   fi
+ }
+ 
++SAVE_INFILE="$INFILE"
++SAVE_OUTFILE="$OUTFILE"
++SAVE_COPYDB="$COPYDB"
++SAVE_COMPRESS="$COMPRESS"
++SAVE_MLTEXT="$MLTEXT"
++SAVE_TERMINATE="$TERMINATE"
++SAVE_NOWRITE="$NOWRITE"
++unset INFILE OUTFILE COPYDB COMPRESS MLTEXT TERMINATE NOWRITE
++INFILE="$SAVE_INFILE"
++OUTFILE="$SAVE_OUTFILE"
++COPYDB="$SAVE_COPYDB"
++COMPRESS="$SAVE_COMPRESS"
++MLTEXT="$SAVE_MLTEXT"
++TERMINATE="$SAVE_TERMINATE"
++NOWRITE="$SAVE_NOWRITE"
+ 
+ ## compiler executables and libraries
+ 
Index: files/patch-lib-scripts-run_polyml_5.1
===================================================================
RCS file: files/patch-lib-scripts-run_polyml_5.1
diff -N files/patch-lib-scripts-run_polyml_5.1
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-scripts-run_polyml_5.1	23 Feb 2008 11:15:46 -0000
@@ -0,0 +1,50 @@
+--- lib/scripts/run-polyml-5.1.orig	Tue Nov 20 21:42:15 2007
++++ lib/scripts/run-polyml-5.1	Sat Jan 12 18:01:39 2008
+@@ -1,22 +1,20 @@
+-#!/usr/bin/env bash
++#!/bin/sh
+ #
+ # $Id: run-polyml-5.1,v 1.7 2007/11/20 10:42:15 wenzelm Exp $
+ # Author: Makarius
+ #
+ # Poly/ML startup script (for 5.1)
+ 
+-export -n INFILE OUTFILE COPYDB COMPRESS MLTEXT TERMINATE NOWRITE
+-
+ 
+ ## diagnostics
+ 
+-function fail_out()
++fail_out()
+ {
+   echo "Unable to create output heap file: \"$OUTFILE\"" >&2
+   exit 2
+ }
+ 
+-function check_file()
++check_file()
+ {
+   if [ ! -f "$1" ]; then
+     echo "Unable to locate $1" >&2
+@@ -25,6 +23,21 @@
+   fi
+ }
+ 
++SAVE_INFILE="$INFILE"
++SAVE_OUTFILE="$OUTFILE"
++SAVE_COPYDB="$COPYDB"
++SAVE_COMPRESS="$COMPRESS"
++SAVE_MLTEXT="$MLTEXT"
++SAVE_TERMINATE="$TERMINATE"
++SAVE_NOWRITE="$NOWRITE"
++unset INFILE OUTFILE COPYDB COMPRESS MLTEXT TERMINATE NOWRITE
++INFILE="$SAVE_INFILE"
++OUTFILE="$SAVE_OUTFILE"
++COPYDB="$SAVE_COPYDB"
++COMPRESS="$SAVE_COMPRESS"
++MLTEXT="$SAVE_MLTEXT"
++TERMINATE="$SAVE_TERMINATE"
++NOWRITE="$SAVE_NOWRITE"
+ 
+ ## compiler executables and libraries
+ 
Index: files/patch-lib-scripts-run_poplogml
===================================================================
RCS file: files/patch-lib-scripts-run_poplogml
diff -N files/patch-lib-scripts-run_poplogml
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-scripts-run_poplogml	23 Feb 2008 11:15:46 -0000
@@ -0,0 +1,59 @@
+--- lib/scripts/run-poplogml.orig	Tue Oct 11 21:28:04 2005
++++ lib/scripts/run-poplogml	Sat Jan 12 18:01:54 2008
+@@ -1,22 +1,20 @@
+-#!/usr/bin/env bash
++#!/bin/sh
+ #
+ # $Id: run-poplogml,v 1.5 2005/10/11 11:28:04 wenzelm Exp $
+ # Author: Makarius
+ #
+ # Poplog/PML startup script (version 15.6/2.1).
+ 
+-export -n INFILE OUTFILE COPYDB COMPRESS MLTEXT TERMINATE NOWRITE
+-
+ 
+ ## diagnostics
+ 
+-function fail_out()
++fail_out()
+ {
+   echo "Unable to create output heap file: \"$OUTFILE\"" >&2
+   exit 2
+ }
+ 
+-function check_mlhome_file()
++check_mlhome_file()
+ {
+   if [ ! -f "$1" ]; then
+     echo "Unable to locate $1" >&2
+@@ -25,7 +23,7 @@
+   fi
+ }
+ 
+-function check_heap_file()
++check_heap_file()
+ {
+   if [ ! -f "$1" ]; then
+     echo "Expected to find ML heap file $1" >&2
+@@ -35,6 +33,21 @@
+   fi
+ }
+ 
++SAVE_INFILE="$INFILE"
++SAVE_OUTFILE="$OUTFILE"
++SAVE_COPYDB="$COPYDB"
++SAVE_COMPRESS="$COMPRESS"
++SAVE_MLTEXT="$MLTEXT"
++SAVE_TERMINATE="$TERMINATE"
++SAVE_NOWRITE="$NOWRITE"
++unset INFILE OUTFILE COPYDB COMPRESS MLTEXT TERMINATE NOWRITE
++INFILE="$SAVE_INFILE"
++OUTFILE="$SAVE_OUTFILE"
++COPYDB="$SAVE_COPYDB"
++COMPRESS="$SAVE_COMPRESS"
++MLTEXT="$SAVE_MLTEXT"
++TERMINATE="$SAVE_TERMINATE"
++NOWRITE="$SAVE_NOWRITE"
+ 
+ ## prepare databases
+ 
Index: files/patch-lib-scripts-run_smlnj
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-lib-scripts-run_smlnj,v
retrieving revision 1.1
diff -u -r1.1 patch-lib-scripts-run_smlnj
--- files/patch-lib-scripts-run_smlnj	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-lib-scripts-run_smlnj	23 Feb 2008 11:15:46 -0000
@@ -1,6 +1,11 @@
 --- lib/scripts/run-smlnj.orig	Mon Jun 21 18:25:58 2004
-+++ lib/scripts/run-smlnj	Sun Sep  2 20:02:25 2007
-@@ -5,18 +5,16 @@
++++ lib/scripts/run-smlnj	Fri Sep 14 18:01:25 2007
+@@ -1,22 +1,20 @@
+-#!/usr/bin/env bash
++#!/bin/sh
+ #
+ # $Id: run-smlnj,v 1.28 2004/06/21 08:25:58 kleing Exp $
+ # Author: Markus Wenzel, TU Muenchen
  #
  # SML/NJ startup script (for 110 or later).
  
Index: files/patch-lib-scripts-showtime
===================================================================
RCS file: files/patch-lib-scripts-showtime
diff -N files/patch-lib-scripts-showtime
--- files/patch-lib-scripts-showtime	10 Sep 2007 12:11:09 -0000	1.1
+++ /dev/null	1 Jan 1970 00:00:00 -0000
@@ -1,26 +0,0 @@
---- lib/scripts/showtime.orig	Mon Jun 21 18:25:58 2004
-+++ lib/scripts/showtime	Sun Sep  2 19:05:48 2007
-@@ -1,18 +1,18 @@
--#!/usr/bin/env bash
-+#!/bin/sh
- #
- # $Id: showtime,v 1.5 2004/06/21 08:25:58 kleing Exp $
- # Author: Markus Wenzel, TU Muenchen
- #
- # showtime - print time.
- 
--TIME="$1"
-+TIME=$(( `date +'%j * 86400 + %H * 3600 + %M * 60 + %S'` - "$1" ))
- 
--SECS=$[ $TIME % 60 ]
-+SECS=$(( $TIME % 60 ))
- [ $SECS -lt 10 ] && SECS="0$SECS"
- 
--MINUTES=$[ ($TIME / 60) % 60 ]
-+MINUTES=$(( ($TIME / 60) % 60 ))
- [ $MINUTES -lt 10 ] && MINUTES="0$MINUTES"
- 
--HOURS=$[ $TIME / 3600 ]
-+HOURS=$(( $TIME / 3600 ))
- 
- echo "${HOURS}:${MINUTES}:${SECS}"
Index: files/patch-lib-scripts-timestart.bash
===================================================================
RCS file: files/patch-lib-scripts-timestart.bash
diff -N files/patch-lib-scripts-timestart.bash
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-scripts-timestart.bash	23 Feb 2008 11:15:46 -0000
@@ -0,0 +1,16 @@
+--- lib/scripts/timestart.bash.orig	Thu Dec  8 01:23:22 2005
++++ lib/scripts/timestart.bash	Sat Jan 12 17:53:32 2008
+@@ -10,9 +10,11 @@
+ #set by configure
+ AUTO_PERL=perl
+ 
+-function get_times () {
+-  local TMP="/tmp/get_times$$"
++get_times () {
++  local TMP SECONDS
++  TMP="/tmp/get_times$$"
+   times > "$TMP"   # No pipe here!
++  SECONDS=$(( `date +'%j * 86400 + %H * 3600 + %M * 60 + %S'` ))
+   TIMES_RESULT="$SECONDS $(echo $(cat "$TMP") | "$AUTO_PERL" -pe 's,\d+m\d+\.\d+s \d+m\d+\.\d+s (\d+)m(\d+)\.\d+s +(\d+)m(\d+)\.\d+s, $1 * 60 + $2 + $3 * 60 + $4,e')"
+   rm -f "$TMP"
+ }
Index: files/patch-lib-scripts-timestop.bash
===================================================================
RCS file: files/patch-lib-scripts-timestop.bash
diff -N files/patch-lib-scripts-timestop.bash
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-lib-scripts-timestop.bash	23 Feb 2008 11:15:46 -0000
@@ -0,0 +1,44 @@
+--- lib/scripts/timestop.bash.orig	Fri Dec  2 04:44:47 2005
++++ lib/scripts/timestop.bash	Sat Jan 12 17:54:13 2008
+@@ -7,28 +7,29 @@
+ 
+ TIMES_REPORT=""
+ 
+-function show_times ()
++show_times ()
+ {
+-  local TIMES_START="$TIMES_RESULT"
++  local TIMES_START TIMES_STOP KIND START STOP TIME SECS MINUTES HOURS \
++	KIND_NAME RESULT
++
++  TIMES_START="$TIMES_RESULT"
+   get_times
+-  local TIMES_STOP="$TIMES_RESULT"
+-  local KIND
++  TIMES_STOP="$TIMES_RESULT"
+   for KIND in 1 2
+   do
+-    local START=$(echo "$TIMES_START" | cut -d " " -f $KIND)
+-    local STOP=$(echo "$TIMES_STOP" | cut -d " " -f $KIND)
++    START=$(echo "$TIMES_START" | cut -d " " -f $KIND)
++    STOP=$(echo "$TIMES_STOP" | cut -d " " -f $KIND)
+ 
+-    local TIME=$[ $STOP - $START ]
+-    local SECS=$[ $TIME % 60 ]
++    TIME=$(( $STOP - $START ))
++    SECS=$(( $TIME % 60 ))
+     [ $SECS -lt 10 ] && SECS="0$SECS"
+-    local MINUTES=$[ ($TIME / 60) % 60 ]
++    MINUTES=$(( ($TIME / 60) % 60 ))
+     [ $MINUTES -lt 10 ] && MINUTES="0$MINUTES"
+-    local HOURS=$[ $TIME / 3600 ]
++    HOURS=$(( $TIME / 3600 ))
+ 
+-    local KIND_NAME
+     [ "$KIND" = 1 ] && KIND_NAME="elapsed time"
+     [ "$KIND" = 2 ] && KIND_NAME="cpu time"
+-    local RESULT="${HOURS}:${MINUTES}:${SECS} ${KIND_NAME}"
++    RESULT="${HOURS}:${MINUTES}:${SECS} ${KIND_NAME}"
+ 
+     if [ -z "$TIMES_REPORT" ]; then
+       TIMES_REPORT="$RESULT"
Index: files/patch-src-Pure-mk
===================================================================
RCS file: /home/ncvs/ports/math/isabelle/files/patch-src-Pure-mk,v
retrieving revision 1.1
diff -u -r1.1 patch-src-Pure-mk
--- files/patch-src-Pure-mk	10 Sep 2007 12:11:09 -0000	1.1
+++ files/patch-src-Pure-mk	23 Feb 2008 11:15:46 -0000
@@ -1,10 +1,10 @@
---- src/Pure/mk.orig	Sun Jun 12 07:19:36 2005
-+++ src/Pure/mk	Sun Sep  2 19:22:39 2007
+--- src/Pure/mk.orig	Sat Jan 12 17:35:00 2008
++++ src/Pure/mk	Sat Jan 12 17:36:05 2008
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env bash
 +#!/bin/sh
  #
- # $Id: mk,v 1.27 2005/06/11 21:19:36 wenzelm Exp $
+ # $Id: mk,v 1.32 2007/01/04 20:58:46 wenzelm Exp $
  # Author: Markus Wenzel, TU Muenchen
 @@ -10,7 +10,7 @@
  
@@ -24,12 +24,3 @@
  {
    echo "$1" >&2
    exit 2
-@@ -81,7 +81,7 @@
- 
- # run isabelle
- 
--SECONDS=0
-+SECONDS=$(( `date +'%j * 86400 + %H * 3600 + %M * 60 + %S'` ))
- 
- if [ -z "$RAW" ]; then
-   ITEM="Pure"
Index: files/polyml-5.0.ML
===================================================================
RCS file: files/polyml-5.0.ML
diff -N files/polyml-5.0.ML
--- files/polyml-5.0.ML	22 Mar 2007 11:32:00 -0000	1.1
+++ /dev/null	1 Jan 1970 00:00:00 -0000
@@ -1,33 +0,0 @@
-(*  Title:      Pure/ML-Systems/polyml-5.0.ML
-    ID:         $Id: polyml-5.0.ML,v 1.1 2006/12/07 13:11:39 wenzelm Exp $
-
-Compatibility wrapper for Poly/ML 5.0 -- version for Isabelle2005.
-*)
-
-structure Posix =
-struct
-  open Posix;
-  structure IO =
-  struct
-    open IO;
-    val mkReader = mkTextReader;
-    val mkWriter = mkTextWriter;
-  end;
-end;
-
-structure TextIO =
-struct
-  open TextIO;
-  fun inputLine is = Option.getOpt (TextIO.inputLine is, "");
-end;
-
-structure Substring =
-struct
-  open Substring;
-  val all = full;
-end;
-
-
-use "ML-Systems/polyml.ML";
-
-val pointer_eq = PolyML.pointerEq;
Index: files/proofgeneral-settings.el
===================================================================
RCS file: files/proofgeneral-settings.el
diff -N files/proofgeneral-settings.el
--- files/proofgeneral-settings.el	22 Mar 2007 11:32:00 -0000	1.1
+++ /dev/null	1 Jan 1970 00:00:00 -0000
@@ -1,17 +0,0 @@
-;;;
-;;; $Id: proofgeneral-settings.el,v 1.2 2001/09/28 18:08:05 wenzelm Exp $
-;;;
-;;; Options for Proof General
-
-;; Examples for sensible settings:
-
-;(custom-set-variables '(isar-eta-contract nil))
-
-;(custom-set-faces
-; '(proof-locked-face
-;   ((((type x) (class color) (background light)) (:background "lightsteelblue2")))))
-
-; Makarius' Poly/ML 5.0 patches
-(custom-set-variables
- '(proof-shell-pre-interrupt-hook (lambda () t)))
-
Index: files/run-polyml-5.0
===================================================================
RCS file: files/run-polyml-5.0
diff -N files/run-polyml-5.0
--- files/run-polyml-5.0	10 Sep 2007 12:11:09 -0000	1.2
+++ /dev/null	1 Jan 1970 00:00:00 -0000
@@ -1,100 +0,0 @@
-#!/bin/sh
-#
-# $Id: run-polyml-5.0,v 1.2 2006/12/08 21:18:35 wenzelm Exp $
-# Author: Makarius
-#
-# Poly/ML startup script (for 5.0)
-
-
-## diagnostics
-
-fail_out()
-{
-  echo "Unable to create output heap file: \"$OUTFILE\"" >&2
-  exit 2
-}
-
-check_file()
-{
-  if [ ! -f "$1" ]; then
-    echo "Unable to locate $1" >&2
-    echo "Please check your ML system settings!" >&2
-    exit 2
-  fi
-}
-
-
-## compiler executables and libraries
-
-POLY="$ML_HOME/poly"
-check_file "$POLY"
-
-if [ "$(basename "$ML_HOME")" = bin ]; then
-  POLYLIB="$(cd "$ML_HOME"; cd "$(pwd -P)"; cd ../lib; pwd)"
-else
-  POLYLIB="$ML_HOME"
-fi
-
-export LD_LIBRARY_PATH="$POLYLIB:$LD_LIBRARY_PATH"
-export DYLD_LIBRARY_PATH="$POLYLIB:$DYLD_LIBRARY_PATH"
-
-
-## prepare databases
-
-if [ -z "$INFILE" ]; then
-  EXIT="fun exit 0 = (OS.Process.exit OS.Process.success): unit | exit _ = OS.Process.exit OS.Process.failure;"
-else
-  check_file "$INFILE"
-  POLY="$INFILE"
-  EXIT=""
-fi
-
-ROOT_FUNCTION="fn () => (Signal.signal (2, Signal.SIG_HANDLE (fn _ => Process.interruptConsoleProcesses ())); PolyML.rootFunction ())"
-
-if [ -z "$OUTFILE" ]; then
-  COMMIT='fun commit () = (TextIO.output (TextIO.stdErr, "Error - Database is not opened for writing.\n"); false);'
-else
-  if [ -z "$COMPRESS" ]; then
-    COMMIT="fun commit () = (TextIO.output (TextIO.stdOut, \"Exporting $OUTFILE\n\"); PolyML.export (\"$OUTFILE\", $ROOT_FUNCTION); true);"
-  else
-    COMMIT="fun commit () = (PolyML.shareCommonData PolyML.rootFunction; TextIO.output (TextIO.stdOut, \"Exporting $OUTFILE\n\"); PolyML.export (\"$OUTFILE\", $ROOT_FUNCTION); true);"
-  fi
-  [ -f "$OUTFILE" ] && { chmod +w "$OUTFILE" || fail_out; }
-  rm -f "${OUTFILE}.o" || fail_out
-fi
-
-## run it!
-
-MLTEXT="PolyML.Compiler.printInAlphabeticalOrder := false; $EXIT $COMMIT $MLTEXT"
-MLEXIT="commit();"
-
-if [ -z "$TERMINATE" ]; then
-  FEEDER_OPTS=""
-else
-  FEEDER_OPTS="-q"
-fi
-
-SAVE_INFILE="$INFILE"
-SAVE_OUTFILE="$OUTFILE"
-SAVE_MLTEXT="$MLTEXT"
-SAVE_NOWRITE="$NOWRITE"
-unset INFILE OUTFILE COPYDB COMPRESS MLTEXT TERMINATE NOWRITE
-INFILE="$SAVE_INFILE"
-OUTFILE="$SAVE_OUTFILE"
-MLTEXT="$SAVE_MLTEXT"
-NOWRITE="$SAVE_NOWRITE"
-
-"$ISABELLE_HOME/lib/scripts/feeder" -p -h "$MLTEXT" -t "$MLEXIT" $FEEDER_OPTS | \
-  { read FPID; "$POLY" $ML_OPTIONS; RC="$?"; kill -HUP "$FPID"; exit "$RC"; }
-RC="$?"
-
-if [ -n "$OUTFILE" ]; then
-  if [ -e "${OUTFILE}.o" ]; then
-    cc -o "$OUTFILE" "${OUTFILE}.o" -L"$POLYLIB" -lpolymain -lpolyml -lstdc++ || fail_out
-    rm -f "${OUTFILE}.o"
-    [ -e "${OUTFILE}.exe" ] && mv "${OUTFILE}.exe" "$OUTFILE"
-  fi
-  [ -f "$OUTFILE" -a -n "$NOWRITE" ] && chmod -w "$OUTFILE"
-fi
-
-exit "$RC"
--- isabelle-2007.patch ends here ---

>Release-Note:
>Audit-Trail:
>Unformatted:

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