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Date:      Thu, 3 Apr 2014 10:12:48 GMT
From:      pkg-fallout-builder@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [REL - 83i386-default][science/gromacs] Failed for gromacs-4.6.5_2 in build
Message-ID:  <201404031012.s33ACmYw054477@beefy1.isc.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: head/science/gromacs/Makefile 347809 2014-03-10 20:55:20Z gerald $
Log URL:        http://beefy1.isc.freebsd.org/bulk/83i386-default/2014-04-02_23h44m56s/logs/gromacs-4.6.5_2.log
Build URL:      http://beefy1.isc.freebsd.org/bulk/83i386-default/2014-04-02_23h44m56s
Log:

====>> Building science/gromacs
build started at Thu Apr  3 10:11:39 UTC 2014
port directory: /usr/ports/science/gromacs
building for: FreeBSD 83i386-default-job-01 8.3-RELEASE-p14 FreeBSD 8.3-RELEASE-p14 i386
maintained by: ports@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/gromacs/Makefile 347809 2014-03-10 20:55:20Z gerald $
Poudriere version: 3.1-pre

---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=803000
UNAME_v=FreeBSD 8.3-RELEASE-p14
UNAME_r=8.3-RELEASE-p14
FTP_PASSIVE_MODE=YES
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/83i386-default/ref
PKG_EXT=txz
tpid=23118
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=gromacs-4.6.5_2
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=83i386-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for gromacs-4.6.5_2:
     ATLAS=off: Use ATLAS for BLAS and LAPACK
     FLOAT=on: Use single instead of double precision
     GSL=on: Extra analysis using math/gsl
     SIMD=off: Use CPU-specific optimizations
     X11=on: X11 (graphics) support
====> MPI (Message Passing Interface) support: you can only select none or one of them
     MPICH=off: MPI support using net/mpich2
     OMPI=off: MPI support using net/openmpi
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" ac_cv_path_PERL=/usr/local/bin/perl PKG_CONFIG=pkgconf SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc47  -L/usr/local/lib/gcc47 -B/usr/local/bin"  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  BSD_INSTALL_SCRIPT="install  -o root 
 -g wheel -m 555"  BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  -o root -g wheel -m 444"
--End MAKE_ENV--

--SUB_LIST--
ATLAS="@comment
"
NO_ATLAS=""
FLOAT=""
NO_FLOAT="@comment
"
GSL=""
NO_GSL="@comment
"
SIMD="@comment
"
NO_SIMD=""
X11=""
NO_X11="@comment
"
MPICH="@comment
"
NO_MPICH=""
OMPI="@comment
"
NO_OMPI=""
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/gromacs
DOCSDIR=/usr/local/share/doc/gromacs
EXAMPLESDIR=/usr/local/share/examples/gromacs
WWWDIR=/usr/local/www/gromacs
ETCDIR=/usr/local/etc/gromacs
--End SUB_LIST--

---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for gromacs-4.6.5_2
=======================<phase: check-config   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   gromacs-4.6.5_2 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.2.7_1.txz
Installing pkg-1.2.7_1... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of gromacs-4.6.5_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-4.6.5_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-4.6.5_2 for building
=> SHA256 Checksum OK for gromacs-4.6.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-4.6.5_2 for building
===>  Extracting for gromacs-4.6.5_2
=> SHA256 Checksum OK for gromacs-4.6.5.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for gromacs-4.6.5_2
===>  Applying FreeBSD patches for gromacs-4.6.5_2
===========================================================================
=======================<phase: build-depends  >============================
===>   gromacs-4.6.5_2 depends on package: fftw3>0 - not found
pkg-static: No package(s) matching fftw3
===>    Verifying install for fftw3>0 in /usr/ports/math/fftw3
===>   Installing existing package /packages/All/fftw3-3.3.3_1.txz
Installing fftw3-3.3.3_1... done
===>   Returning to build of gromacs-4.6.5_2
===>   gromacs-4.6.5_2 depends on file: /usr/local/bin/cmake - not found
===>    Verifying install for /usr/local/bin/cmake in /usr/ports/devel/cmake
===>   Installing existing package /packages/All/cmake-2.8.12.1_4.txz
Installing cmake-2.8.12.1_4...Installing cmake-modules-2.8.12.1_1... done
 done
===>   Returning to build of gromacs-4.6.5_2
===>   gromacs-4.6.5_2 depends on executable: gfortran47 - not found
===>    Verifying install for gfortran47 in /usr/ports/lang/gcc
===>   Installing existing package /packages/All/gcc-4.7.3.txz
Installing gcc-4.7.3...Installing binutils-2.24...Installing gettext-0.18.3.1...Installing libiconv-1.14_3... done
 done
 done
Installing gcc-ecj-4.5... done
Installing gmp-5.1.3_1... done
Installing mpc-1.0.2...Installing mpfr-3.1.2_1... done
 done
 done
===>   Returning to build of gromacs-4.6.5_2
===>   gromacs-4.6.5_2 depends on executable: pkgconf - not found
===>    Verifying install for pkgconf in /usr/ports/devel/pkgconf
===>   Installing existing package /packages/All/pkgconf-0.9.5.txz
Installing pkgconf-0.9.5... done
===>   Returning to build of gromacs-4.6.5_2
===>   gromacs-4.6.5_2 depends on file: /usr/local/bin/as - found
===>   gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found
===>    Verifying install for /usr/local/libdata/pkgconfig/xext.pc in /usr/ports/x11/libXext
===>   Installing existing package /packages/All/libXext-1.3.2,1.txz
Installing libXext-1.3.2,1...Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done
Installing libXau-1.0.8...Installing xproto-7.0.25... done
 done
Installing libXdmcp-1.1.1... done
Installing libxcb-1.9.3...Installing libpthread-stubs-0.3_4... done
Installing libxml2-2.8.0_3... done
 done
 done
Installing xextproto-7.2.1... done
 done
===>   Returning to build of gromacs-4.6.5_2
===>   gromacs-4.6.5_2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===>   gromacs-4.6.5_2 depends on file: /usr/local/bin/perl5.16.3 - not found
===>    Verifying install for /usr/local/bin/perl5.16.3 in /usr/ports/lang/perl5.16
===>   Installing existing package /packages/All/perl5-5.16.3_9.txz
Installing perl5-5.16.3_9... done
===>   Returning to build of gromacs-4.6.5_2
===========================================================================
<snip>
[  4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/sighandler.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/sighandler.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/sighandler.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 
[  4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gbutil.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/gbutil.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gbutil.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/wman.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/wman.c
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[  4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/smalloc.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/smalloc.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/smalloc.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 16
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/calch.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/calch.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/warninp.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/warninp.c
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[  5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/statutil.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/statutil.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/statutil.c
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[  5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/gmxfio.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmxfio.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/atomprop.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/atomprop.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/gmx_random.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_random.c
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[  5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_sort.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/gmx_sort.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_sort.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/do_fit.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/do_fit.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/ifunc.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ifunc.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/copyrite.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/copyrite.c
/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/copyrite.c: In function 'gmx_print_version_info':
/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/copyrite.c:696: warning: format '%lu' expects type 'long unsigned int', but argument 3 has type 'unsigned int'
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/gmx_matrix.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_matrix.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/trnio.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/trnio.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/nrnb.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nrnb.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/md_logging.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/md_logging.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/ewald_util.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ewald_util.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/invblock.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/invblock.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/mvdata.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/mvdata.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc  -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value  -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops  -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib    -fopenmp -o CMakeFiles/gmx.dir/gmx_cyclecounter.c.o   -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_cyclecounter.c
{standard input}: Assembler messages:
{standard input}:28: Error: no such instruction: `rdtscp'
{standard input}:99: Error: no such instruction: `rdtscp'
*** Error code 1

Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5.
*** Error code 1

Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5.
*** Error code 1

Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5.
*** Error code 1

Stop in /usr/ports/science/gromacs.
===>  Cleaning for gromacs-4.6.5_2



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