Skip site navigation (1)Skip section navigation (2)
Date:      Tue, 20 Aug 2019 07:22:53 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120armv7-quarterly][biology/unanimity] Failed for unanimity-3.4.1_1 in build
Message-ID:  <201908200722.x7K7MrJK000587@beefy13.nyi.freebsd.org>

next in thread | raw e-mail | index | archive | help

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Last committer: jbeich@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q3/biology/unanimity/Makefile 498698 2019-04-12 06:36:31Z jbeich $
Log URL:        http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/509396/logs/unanimity-3.4.1_1.log
Build URL:      http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=509396
Log:

=>> Building biology/unanimity
build started at Tue Aug 20 07:19:02 UTC 2019
port directory: /usr/ports/biology/unanimity
package name: unanimity-3.4.1_1
building for: FreeBSD 120armv7-quarterly-job-06 12.0-RELEASE-p9 FreeBSD 12.0-RELEASE-p9 1200086 arm
maintained by: jwb@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q3/biology/unanimity/Makefile 498698 2019-04-12 06:36:31Z jbeich $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300031
Jail OSVERSION: 1200086
Job Id: 06

---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv7
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200086
UNAME_v=FreeBSD 12.0-RELEASE-p9 1200086
UNAME_r=12.0-RELEASE-p9
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
QEMU_EMULATING=1
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/120armv7-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=120armv7-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix /usr/local  --mandir man  --infodir share/info --buildtype release  --strip  _build
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/unanimity/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/unanimity/work  HOME=/wrkdirs/usr/ports/biology/unanimity/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/unanimity/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/unanimity/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/unanimity/work  HOME=/wrkdirs/usr/ports/biology/unanimity/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/unanimity/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/unanimity/work/stage LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing "  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" -lexecinfo -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTAL
 L_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python2.7  PYTHON_LIBDIR=lib/python2.7  PYTHON_PLATFORM=freebsd12  PYTHON_SITELIBDIR=lib/python2.7/site-packages  PYTHON_SUFFIX=27  PYTHON_VER=2.7  PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/unanimity"  EXAMPLESDIR="share/examples/unanimity"  DATADIR="share/unanimity"  WWWDIR="www/unanimity"  ETCDIR="etc/unanimity"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/unanimity DOCSDIR=/usr/local/share/doc/unanimity EXAMPLESDIR=/usr/local/share/examples/unanimity  WWWDIR=/usr/local/www/unanimity ETCDIR=/usr/local/etc/unanimity
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv7
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=yes
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=yes
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=yes
CC_OUTPUT_9d218390_f00456e5=yes
CC_OUTPUT_9d218390_65ad290d=yes
CC_OUTPUT_9d218390_f2776b26=yes
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=yes
CC_OUTPUT_9d218390_160933ec=yes
CC_OUTPUT_9d218390_fb62803b=yes
_OBJC_CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_OBJC_ALTCCVERSION_9d218390=none
ARCH=armv7
OPSYS=FreeBSD
_OSRELEASE=12.0-RELEASE-p9
OSREL=12.0
OSVERSION=1200086
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   unanimity-3.4.1_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.11.1.txz
[120armv7-quarterly-job-06] Installing pkg-1.11.1...
[120armv7-quarterly-job-06] Extracting pkg-1.11.1: .......... done
===>   unanimity-3.4.1_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of unanimity-3.4.1_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by unanimity-3.4.1_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by unanimity-3.4.1_1 for building
=> SHA256 Checksum OK for PacificBiosciences-unanimity-v3.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
<snip>
/usr/include/c++/v1/iterator:1425:74: note: in instantiation of member function 'std::__1::__vector_base<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> >::~__vector_base' requested here
    template <class _Tp, class _Alloc> friend class _LIBCPP_TEMPLATE_VIS vector;
                                                                         ^
/usr/include/c++/v1/memory:1860:64: note: qualify call to silence this warning
    _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
                                                               ^
1 warning generated.
[35/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Integrator.cpp.o' -MF 'src/25a6634@@unanimity@sha/Integrator.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Integrator.cpp.o' -c ../src/Integrator.cpp
In file included from ../src/Integrator.cpp:7:
In file included from /usr/include/c++/v1/numeric:144:
In file included from /usr/include/c++/v1/functional:487:
/usr/include/c++/v1/memory:1860:58: warning: destructor called on non-final 'PacBio::Consensus::Mutation' that has virtual functions but non-virtual destructor [-Wdelete-non-virtual-dtor]
    _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
                                                         ^
/usr/include/c++/v1/memory:1727:18: note: in instantiation of member function 'std::__1::allocator<PacBio::Consensus::Mutation>::destroy' requested here
            {__a.destroy(__p);}
                 ^
/usr/include/c++/v1/memory:1595:14: note: in instantiation of function template specialization 'std::__1::allocator_traits<std::__1::allocator<PacBio::Consensus::Mutation> >::__destroy<PacBio::Consensus::Mutation>' requested here
            {__destroy(__has_destroy<allocator_type, _Tp*>(), __a, __p);}
             ^
/usr/include/c++/v1/vector:413:25: note: in instantiation of function template specialization 'std::__1::allocator_traits<std::__1::allocator<PacBio::Consensus::Mutation> >::destroy<PacBio::Consensus::Mutation>' requested here
        __alloc_traits::destroy(__alloc(), _VSTD::__to_raw_pointer(--__soon_to_be_end));
                        ^
/usr/include/c++/v1/vector:356:29: note: in instantiation of member function 'std::__1::__vector_base<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> >::__destruct_at_end' requested here
    void clear() _NOEXCEPT {__destruct_at_end(__begin_);}
                            ^
/usr/include/c++/v1/vector:441:9: note: in instantiation of member function 'std::__1::__vector_base<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> >::clear' requested here
        clear();
        ^
/usr/include/c++/v1/iterator:1425:74: note: in instantiation of member function 'std::__1::__vector_base<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> >::~__vector_base' requested here
    template <class _Tp, class _Alloc> friend class _LIBCPP_TEMPLATE_VIS vector;
                                                                         ^
/usr/include/c++/v1/memory:1860:64: note: qualify call to silence this warning
    _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
                                                               ^
1 warning generated.
[36/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/IntervalMask.cpp.o' -MF 'src/25a6634@@unanimity@sha/IntervalMask.cpp.o.d' -o 'src/25a6634@@unanimity@sha/IntervalMask.cpp.o' -c ../src/IntervalMask.cpp
[37/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/ModelConfig.cpp.o' -MF 'src/25a6634@@unanimity@sha/ModelConfig.cpp.o.d' -o 'src/25a6634@@unanimity@sha/ModelConfig.cpp.o' -c ../src/ModelConfig.cpp
[38/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/ModelFactory.cpp.o' -MF 'src/25a6634@@unanimity@sha/ModelFactory.cpp.o.d' -o 'src/25a6634@@unanimity@sha/ModelFactory.cpp.o' -c ../src/ModelFactory.cpp
[39/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/ModelFormFactory.cpp.o' -MF 'src/25a6634@@unanimity@sha/ModelFormFactory.cpp.o.d' -o 'src/25a6634@@unanimity@sha/ModelFormFactory.cpp.o' -c ../src/ModelFormFactory.cpp
[40/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/ModelSelection.cpp.o' -MF 'src/25a6634@@unanimity@sha/ModelSelection.cpp.o.d' -o 'src/25a6634@@unanimity@sha/ModelSelection.cpp.o' -c ../src/ModelSelection.cpp
[41/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Mutation.cpp.o' -MF 'src/25a6634@@unanimity@sha/Mutation.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Mutation.cpp.o' -c ../src/Mutation.cpp
[42/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Polish.cpp.o' -MF 'src/25a6634@@unanimity@sha/Polish.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Polish.cpp.o' -c ../src/Polish.cpp
In file included from ../src/Polish.cpp:3:
In file included from /usr/include/c++/v1/algorithm:643:
/usr/include/c++/v1/memory:1860:58: warning: destructor called on non-final 'PacBio::Consensus::Mutation' that has virtual functions but non-virtual destructor [-Wdelete-non-virtual-dtor]
    _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
                                                         ^
/usr/include/c++/v1/memory:1727:18: note: in instantiation of member function 'std::__1::allocator<PacBio::Consensus::Mutation>::destroy' requested here
            {__a.destroy(__p);}
                 ^
/usr/include/c++/v1/memory:1595:14: note: in instantiation of function template specialization 'std::__1::allocator_traits<std::__1::allocator<PacBio::Consensus::Mutation> >::__destroy<PacBio::Consensus::Mutation>' requested here
            {__destroy(__has_destroy<allocator_type, _Tp*>(), __a, __p);}
             ^
/usr/include/c++/v1/__split_buffer:296:25: note: in instantiation of function template specialization 'std::__1::allocator_traits<std::__1::allocator<PacBio::Consensus::Mutation> >::destroy<PacBio::Consensus::Mutation>' requested here
        __alloc_traits::destroy(__alloc(), __to_raw_pointer(--__end_));
                        ^
/usr/include/c++/v1/__split_buffer:141:10: note: in instantiation of member function 'std::__1::__split_buffer<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> &>::__destruct_at_end' requested here
        {__destruct_at_end(__new_last, false_type());}
         ^
/usr/include/c++/v1/__split_buffer:88:10: note: in instantiation of member function 'std::__1::__split_buffer<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> &>::__destruct_at_end' requested here
        {__destruct_at_end(__begin_);}
         ^
/usr/include/c++/v1/__split_buffer:341:5: note: in instantiation of member function 'std::__1::__split_buffer<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> &>::clear' requested here
    clear();
    ^
/usr/include/c++/v1/vector:1628:49: note: in instantiation of member function 'std::__1::__split_buffer<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> &>::~__split_buffer' requested here
    __split_buffer<value_type, allocator_type&> __v(__recommend(size() + 1), size(), __a);
                                                ^
/usr/include/c++/v1/vector:1655:9: note: in instantiation of function template specialization 'std::__1::vector<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> >::__emplace_back_slow_path<PacBio::Consensus::Mutation>' requested here
        __emplace_back_slow_path(_VSTD::forward<_Args>(__args)...);
        ^
./src/Polish.cpp:87:50: note: in instantiation of function template specialization 'std::__1::vector<PacBio::Consensus::Mutation, std::__1::allocator<PacBio::Consensus::Mutation> >::emplace_back<PacBio::Consensus::Mutation>' requested here
            if (!containedWithin(last, j)) muts->emplace_back(Mutation::Insertion(i, j));
                                                 ^
/usr/include/c++/v1/memory:1860:64: note: qualify call to silence this warning
    _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
                                                               ^
/usr/include/c++/v1/memory:1732:17: warning: destructor called on non-final 'PacBio::Consensus::ScoredMutation' that has virtual functions but non-virtual destructor [-Wdelete-non-virtual-dtor]
                __p->~_Tp();
                ^
/usr/include/c++/v1/memory:1595:14: note: in instantiation of function template specialization 'std::__1::allocator_traits<std::__1::allocator<std::__1::__list_node<PacBio::Consensus::ScoredMutation, void *> > >::__destroy<PacBio::Consensus::ScoredMutation>' requested here
            {__destroy(__has_destroy<allocator_type, _Tp*>(), __a, __p);}
             ^
/usr/include/c++/v1/list:1830:34: note: in instantiation of function template specialization 'std::__1::allocator_traits<std::__1::allocator<std::__1::__list_node<PacBio::Consensus::ScoredMutation, void *> > >::destroy<PacBio::Consensus::ScoredMutation>' requested here
            __node_alloc_traits::destroy(__na, _VSTD::addressof(__np->__value_));
                                 ^
/usr/include/c++/v1/list:2131:19: note: in instantiation of member function 'std::__1::list<PacBio::Consensus::ScoredMutation, std::__1::allocator<PacBio::Consensus::ScoredMutation> >::erase' requested here
            __i = erase(__i, __j);
                  ^
./src/Polish.cpp:181:21: note: in instantiation of function template specialization 'std::__1::list<PacBio::Consensus::ScoredMutation, std::__1::allocator<PacBio::Consensus::ScoredMutation> >::remove_if<(lambda at ../src/Polish.cpp:182:13)>' requested here
        scoredMuts->remove_if(
                    ^
/usr/include/c++/v1/memory:1732:23: note: qualify call to silence this warning
                __p->~_Tp();
                      ^
2 warnings generated.
[43/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/PolishResult.cpp.o' -MF 'src/25a6634@@unanimity@sha/PolishResult.cpp.o.d' -o 'src/25a6634@@unanimity@sha/PolishResult.cpp.o' -c ../src/PolishResult.cpp
[44/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Read.cpp.o' -MF 'src/25a6634@@unanimity@sha/Read.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Read.cpp.o' -c ../src/Read.cpp
[45/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Recursor.cpp.o' -MF 'src/25a6634@@unanimity@sha/Recursor.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Recursor.cpp.o' -c ../src/Recursor.cpp
[46/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Sequence.cpp.o' -MF 'src/25a6634@@unanimity@sha/Sequence.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Sequence.cpp.o' -c ../src/Sequence.cpp
[47/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Template.cpp.o' -MF 'src/25a6634@@unanimity@sha/Template.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Template.cpp.o' -c ../src/Template.cpp
[48/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_FastaWriter.cpp.o' -MF 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_FastaWriter.cpp.o.d' -o 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_FastaWriter.cpp.o' -c ../src/genomicconsensus/experimental/io/FastaWriter.cpp
[49/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_FastqWriter.cpp.o' -MF 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_FastqWriter.cpp.o.d' -o 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_FastqWriter.cpp.o' -c ../src/genomicconsensus/experimental/io/FastqWriter.cpp
[50/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_GffWriter.cpp.o' -MF 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_GffWriter.cpp.o.d' -o 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_GffWriter.cpp.o' -c ../src/genomicconsensus/experimental/io/GffWriter.cpp
[51/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_VcfWriter.cpp.o' -MF 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_VcfWriter.cpp.o.d' -o 'src/25a6634@@unanimity@sha/genomicconsensus_experimental_io_VcfWriter.cpp.o' -c ../src/genomicconsensus/experimental/io/VcfWriter.cpp
[52/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/.._third-party_cpp-optparse_OptionParser.cpp.o' -MF 'src/25a6634@@unanimity@sha/.._third-party_cpp-optparse_OptionParser.cpp.o.d' -o 'src/25a6634@@unanimity@sha/.._third-party_cpp-optparse_OptionParser.cpp.o' -c ../third-party/cpp-optparse/OptionParser.cpp
[53/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/ChemistryMapping.cpp.o' -MF 'src/25a6634@@unanimity@sha/ChemistryMapping.cpp.o.d' -o 'src/25a6634@@unanimity@sha/ChemistryMapping.cpp.o' -c ../src/ChemistryMapping.cpp
[54/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/ChemistryTriple.cpp.o' -MF 'src/25a6634@@unanimity@sha/ChemistryTriple.cpp.o.d' -o 'src/25a6634@@unanimity@sha/ChemistryTriple.cpp.o' -c ../src/ChemistryTriple.cpp
[55/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Interval.cpp.o' -MF 'src/25a6634@@unanimity@sha/Interval.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Interval.cpp.o' -c ../src/Interval.cpp
[56/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/ReadId.cpp.o' -MF 'src/25a6634@@unanimity@sha/ReadId.cpp.o.d' -o 'src/25a6634@@unanimity@sha/ReadId.cpp.o' -c ../src/ReadId.cpp
[57/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/SparsePoa.cpp.o' -MF 'src/25a6634@@unanimity@sha/SparsePoa.cpp.o.d' -o 'src/25a6634@@unanimity@sha/SparsePoa.cpp.o' -c ../src/SparsePoa.cpp
[58/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/SubreadResultCounter.cpp.o' -MF 'src/25a6634@@unanimity@sha/SubreadResultCounter.cpp.o.d' -o 'src/25a6634@@unanimity@sha/SubreadResultCounter.cpp.o' -c ../src/SubreadResultCounter.cpp
[59/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Timer.cpp.o' -MF 'src/25a6634@@unanimity@sha/Timer.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Timer.cpp.o' -c ../src/Timer.cpp
[60/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/Utility.cpp.o' -MF 'src/25a6634@@unanimity@sha/Utility.cpp.o.d' -o 'src/25a6634@@unanimity@sha/Utility.cpp.o' -c ../src/Utility.cpp
[61/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/ConsensusSettings.cpp.o' -MF 'src/25a6634@@unanimity@sha/ConsensusSettings.cpp.o.d' -o 'src/25a6634@@unanimity@sha/ConsensusSettings.cpp.o' -c ../src/ConsensusSettings.cpp
[62/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/LocalAlignment.cpp.o' -MF 'src/25a6634@@unanimity@sha/LocalAlignment.cpp.o.d' -o 'src/25a6634@@unanimity@sha/LocalAlignment.cpp.o' -c ../src/LocalAlignment.cpp
[63/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/models_P6C4NoCov_Model.cpp.o' -MF 'src/25a6634@@unanimity@sha/models_P6C4NoCov_Model.cpp.o.d' -o 'src/25a6634@@unanimity@sha/models_P6C4NoCov_Model.cpp.o' -c ../src/models/P6C4NoCov_Model.cpp
[64/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/models_S_P1C1Beta_Model.cpp.o' -MF 'src/25a6634@@unanimity@sha/models_S_P1C1Beta_Model.cpp.o.d' -o 'src/25a6634@@unanimity@sha/models_S_P1C1Beta_Model.cpp.o' -c ../src/models/S_P1C1Beta_Model.cpp
[65/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/models_S_P1C1v1_Model.cpp.o' -MF 'src/25a6634@@unanimity@sha/models_S_P1C1v1_Model.cpp.o.d' -o 'src/25a6634@@unanimity@sha/models_S_P1C1v1_Model.cpp.o' -c ../src/models/S_P1C1v1_Model.cpp
[66/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/models_S_P1C1v2_Model.cpp.o' -MF 'src/25a6634@@unanimity@sha/models_S_P1C1v2_Model.cpp.o.d' -o 'src/25a6634@@unanimity@sha/models_S_P1C1v2_Model.cpp.o' -c ../src/models/S_P1C1v2_Model.cpp
[67/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/models_S_P2C2v5_Model.cpp.o' -MF 'src/25a6634@@unanimity@sha/models_S_P2C2v5_Model.cpp.o.d' -o 'src/25a6634@@unanimity@sha/models_S_P2C2v5_Model.cpp.o' -c ../src/models/S_P2C2v5_Model.cpp
[68/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/models_MarginalModelForm.cpp.o' -MF 'src/25a6634@@unanimity@sha/models_MarginalModelForm.cpp.o.d' -o 'src/25a6634@@unanimity@sha/models_MarginalModelForm.cpp.o' -c ../src/models/MarginalModelForm.cpp
[69/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/models_PwSnrAModelForm.cpp.o' -MF 'src/25a6634@@unanimity@sha/models_PwSnrAModelForm.cpp.o.d' -o 'src/25a6634@@unanimity@sha/models_PwSnrAModelForm.cpp.o' -c ../src/models/PwSnrAModelForm.cpp
[70/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/models_PwSnrModelForm.cpp.o' -MF 'src/25a6634@@unanimity@sha/models_PwSnrModelForm.cpp.o.d' -o 'src/25a6634@@unanimity@sha/models_PwSnrModelForm.cpp.o' -c ../src/models/PwSnrModelForm.cpp
[71/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/models_SnrModelForm.cpp.o' -MF 'src/25a6634@@unanimity@sha/models_SnrModelForm.cpp.o.d' -o 'src/25a6634@@unanimity@sha/models_SnrModelForm.cpp.o' -c ../src/models/SnrModelForm.cpp
[72/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/meson-generated_.._ModelInternalInitializer.cpp.o' -MF 'src/25a6634@@unanimity@sha/meson-generated_.._ModelInternalInitializer.cpp.o.d' -o 'src/25a6634@@unanimity@sha/meson-generated_.._ModelInternalInitializer.cpp.o' -c src/ModelInternalInitializer.cpp
[73/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/meson-generated_.._UnanimityVersion.cpp.o' -MF 'src/25a6634@@unanimity@sha/meson-generated_.._UnanimityVersion.cpp.o.d' -o 'src/25a6634@@unanimity@sha/meson-generated_.._UnanimityVersion.cpp.o' -c src/UnanimityVersion.cpp
[74/97] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/.._third-party_cssw_ssw_cpp.cpp.o' -MF 'src/25a6634@@unanimity@sha/.._third-party_cssw_ssw_cpp.cpp.o.d' -o 'src/25a6634@@unanimity@sha/.._third-party_cssw_ssw_cpp.cpp.o' -c ../third-party/cssw/ssw_cpp.cpp
FAILED: src/25a6634@@unanimity@sha/.._third-party_cssw_ssw_cpp.cpp.o 
/nxb-bin/usr/bin/c++ -Isrc/25a6634@@unanimity@sha -Isrc -I../src -Iinclude -I../include -I../include/pacbio -I../third-party/cssw/ -I/usr/local/include -Xclang -fcolor-diagnostics -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -pthread -Wno-unused-parameter -Wno-non-virtual-dtor -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedef -MD -MQ 'src/25a6634@@unanimity@sha/.._third-party_cssw_ssw_cpp.cpp.o' -MF 'src/25a6634@@unanimity@sha/.._third-party_cssw_ssw_cpp.cpp.o.d' -o 'src/25a6634@@unanimity@sha/.._third-party_cssw_ssw_cpp.cpp.o' -c ../third-party/cssw/ssw_cpp.cpp
In file included from ../third-party/cssw/ssw_cpp.cpp:2:
In file included from ../third-party/cssw/ssw.h:17:
In file included from /nxb-bin/usr/lib/clang/6.0.1/include/emmintrin.h:27:
In file included from /nxb-bin/usr/lib/clang/6.0.1/include/xmmintrin.h:27:
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:47:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
    __builtin_ia32_emms();
    ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:47:5: note: '__builtin_isless' declared here
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:47:25: error: too few arguments to function call, expected 2, have 0
    __builtin_ia32_emms();
                        ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:64:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si'
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:81:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si'
    return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0);
           ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:143:19: error: use of undeclared identifier '__builtin_ia32_packsswb'
    return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:173:19: error: use of undeclared identifier '__builtin_ia32_packssdw'
    return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:203:19: error: use of undeclared identifier '__builtin_ia32_packuswb'
    return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:230:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw'
    return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:253:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd'
    return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:274:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq'
    return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:301:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw'
    return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:324:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd'
    return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:345:19: error: use of undeclared identifier '__builtin_ia32_punpckldq'
    return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:366:19: error: use of undeclared identifier '__builtin_ia32_paddb'
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:387:19: error: use of undeclared identifier '__builtin_ia32_paddw'
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:408:19: error: use of undeclared identifier '__builtin_ia32_paddd'
    return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:430:19: error: use of undeclared identifier '__builtin_ia32_paddsb'
    return (__m64)__builtin_ia32_paddsb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:453:19: error: use of undeclared identifier '__builtin_ia32_paddsw'
    return (__m64)__builtin_ia32_paddsw((__v4hi)__m1, (__v4hi)__m2);
                  ^
/nxb-bin/usr/lib/clang/6.0.1/include/mmintrin.h:475:19: error: use of undeclared identifier '__builtin_ia32_paddusb'
    return (__m64)__builtin_ia32_paddusb((__v8qi)__m1, (__v8qi)__m2);
                  ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/unanimity



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201908200722.x7K7MrJK000587>