Date: Wed, 27 Oct 2021 05:48:35 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - main-armv7-default][biology/molden] Failed for molden-5.8.2_4,1 in stage Message-ID: <202110270548.19R5mZwh081396@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jmd@FreeBSD.org Log URL: http://beefy12.nyi.freebsd.org/data/main-armv7-default/pf11241aff2a6_s1a724aa972/logs/molden-5.8.2_4,1.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=main-armv7-default&build=pf11241aff2a6_s1a724aa972 Log: =>> Building biology/molden build started at Wed Oct 27 05:20:08 UTC 2021 port directory: /usr/ports/biology/molden package name: molden-5.8.2_4,1 building for: FreeBSD main-armv7-default-job-02 14.0-CURRENT FreeBSD 14.0-CURRENT 1400038 arm maintained by: jmd@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400003 Jail OSVERSION: 1400038 Job Id: 02 !!! Jail is newer than host. (Jail: 1400038, Host: 1400003) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1400038 UNAME_v=FreeBSD 14.0-CURRENT 1400038 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for molden-5.8.2_4,1: DATA=on: Install data files DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jmd@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/molden/work/.cache HOME=/wrkdirs/usr/ports/biology/molden/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/molden/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/molden/work/.cache HOME=/wrkdirs/usr/ports/biology/molden/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/molden/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="/ nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/molden" EXAMPLESDIR="share/examples/molden" DATADIR="share/molden" WWWDIR="www/molden" ETCDIR="etc/molden" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/molden DOCSDIR=/usr/local/share/doc/molden EXAMPLESDIR=/usr/local/share/examples/molden WWWDIR=/usr/local/www/molden ETCDIR=/usr/local/etc/molden --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400038 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License Molden accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> molden-5.8.2_4,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.2.pkg [main-armv7-default-job-02] Installing pkg-1.17.2... [main-armv7-default-job-02] Extracting pkg-1.17.2: .......... done ===> molden-5.8.2_4,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of molden-5.8.2_4,1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License Molden accepted by the user => molden5.8.2.tar.gz doesn't seem to exist in /portdistfiles/. <snip> gen_arc_recurse(&comp_sph_pts[j], &comp_sph_pts[i], sp_points,&k,atom_id, 1); ^ tessel_patches.c:262:3: warning: implicit declaration of function 'find_sphere_points' is invalid in C99 [-Wimplicit-function-declaration] find_sphere_points(&(center.vt), 0, ave_center, &atoms[atom_id]); ^ tessel_patches.c:286:7: warning: implicit declaration of function 'new_gen_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] new_gen_sphere_tris(&sp_points[i+1], &sp_points[i], ¢er, atom_id); ^ tessel_patches.c:300:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_arc_recurse(bp0, bp1, sp_points, j, atom_id, convex) ^ tessel_patches.c:312:5: warning: implicit declaration of function 'find_mid_pt' is invalid in C99 [-Wimplicit-function-declaration] find_mid_pt(&new_bp, bp0, bp1, atom_id); ^ tessel_patches.c:327:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] find_sphere_points(sph_pts, j, comp_vert, atom_ptr) ^ tessel_patches.c:342:3: warning: implicit declaration of function 'find_ray_sphere_int' is invalid in C99 [-Wimplicit-function-declaration] find_ray_sphere_int(sph_pts[j].Coord,tempv,ray_dir,atom_ptr->center,ext_rad); ^ tessel_patches.c:360:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] find_torus_points(tor_pts, mid_cusp_pts, num_pts, atom_ptr, probe_centers, ^ 23 warnings generated. /nxb-bin/usr/bin/cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing -c tessel_convex.c tessel_convex.c:67:3: warning: implicit declaration of function 'initialize_r' is invalid in C99 [-Wimplicit-function-declaration] initialize_r(big_p, sph_side, q, num_p, &num_sph_side, num_q, same_order, atom_id, full_torus); ^ tessel_convex.c:82:5: warning: implicit declaration of function 'get_full_torus_mesh' is invalid in C99 [-Wimplicit-function-declaration] get_full_torus_mesh(sph_side, num_sph_side, torus_side, num_q, ^ tessel_convex.c:85:5: warning: implicit declaration of function 'get_partial_torus_mesh' is invalid in C99 [-Wimplicit-function-declaration] get_partial_torus_mesh(sph_side, num_sph_side, torus_side, num_q, ^ tessel_convex.c:97:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] initialize_r(big_p, r, q, num_p, num_r, num_q, same_order, atom_id, full_torus) ^ tessel_convex.c:112:7: warning: implicit declaration of function 'gen_arc_recurse' is invalid in C99 [-Wimplicit-function-declaration] gen_arc_recurse(&big_p[i], &big_p[i+1], r, &j, atom_id, 1); ^ tessel_convex.c:117:7: warning: implicit declaration of function 'gen_arc_recurse' is invalid in C99 [-Wimplicit-function-declaration] gen_arc_recurse(&big_p[i], &big_p[i-1], r, &j, atom_id, 1); ^ tessel_convex.c:130:5: warning: implicit declaration of function 'find_plane_eq' is invalid in C99 [-Wimplicit-function-declaration] find_plane_eq(q[0].Coord, q[1].Coord, q[2].Coord, plane_eq); ^ tessel_convex.c:166:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_linear_recurse(p0, p1, r, j, center, radius, convex) ^ tessel_convex.c:202:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_flipped_sphere_tris(p0, p1, p2, atom_id, flip) ^ tessel_convex.c:208:5: warning: implicit declaration of function 'new_gen_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] new_gen_sphere_tris(p0, p1, p2, atom_id); ^ tessel_convex.c:217:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] new_gen_sphere_tris(bp0, bp1, bp2, atom_id) ^ tessel_convex.c:238:7: warning: implicit declaration of function 'multi_gen_spherical_recurse' is invalid in C99 [-Wimplicit-function-declaration] multi_gen_spherical_recurse(bp0, bp1, &mid_pt, atom_id); ^ tessel_convex.c:243:7: warning: implicit declaration of function 'multi_gen_spherical_recurse' is invalid in C99 [-Wimplicit-function-declaration] multi_gen_spherical_recurse(bp0, bp1, bp2, atom_id); ^ tessel_convex.c:252:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] multi_gen_spherical_recurse(pt0, pt1, pt2, atom_id) ^ tessel_convex.c:275:5: warning: implicit declaration of function 'gen_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_tris(&(tri_pt[0]->vt), &(tri_pt[1]->vt), &(tri_pt[2]->vt)); ^ tessel_convex.c:278:30: warning: implicit declaration of function 'find_mid_pt' is invalid in C99 [-Wimplicit-function-declaration] { if(valid_point&flags[0]) find_mid_pt(&mid_pt[0],tri_pt[0],tri_pt[1],atom_id); ^ tessel_convex.c:314:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] find_mid_pt(mid_pt, tri_pt0, tri_pt1, atom_id) ^ tessel_convex.c:359:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_tris(pt0, pt1, pt2) ^ tessel_convex.c:362:4: warning: implicit declaration of function 'add_tri' is invalid in C99 [-Wimplicit-function-declaration] add_tri(pt0, pt1, pt2, Current_atom); ^ tessel_convex.c:369:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] add_tri(pt0, pt1, pt2, atype) ^ tessel_convex.c:376:5: warning: implicit declaration of function 'write_archive_tri' is invalid in C99 [-Wimplicit-function-declaration] write_archive_tri(pt0, pt1, pt2, atype); ^ 21 warnings generated. /nxb-bin/usr/bin/cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing -c tessel_concave.c tessel_concave.c:22:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_concave(tor_pts, center, flip_verts, cusp_pts, probe, n, cur_torus, torus_cusp) ^ tessel_concave.c:55:5: warning: implicit declaration of function 'gen_concave_tri' is invalid in C99 [-Wimplicit-function-declaration] { gen_concave_tri(tor_pts[0][0],tor_pts[1][0],center[0], flip_verts, probe[0], ^ tessel_concave.c:75:5: warning: implicit declaration of function 'gen_concave_tri' is invalid in C99 [-Wimplicit-function-declaration] { gen_concave_tri(tor_pts[1][n-1],tor_pts[0][n-1],center[1],flip_verts,probe[1], ^ tessel_concave.c:89:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_concave_tri(point0, point1, point2, flip, center, radius) ^ tessel_concave.c:101:5: warning: implicit declaration of function 'gen_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_sphere_tris(&point2, &point1, &point0, fcenter, radius, 0); ^ tessel_concave.c:104:5: warning: implicit declaration of function 'gen_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_sphere_tris(&point0, &point1, &point2, fcenter, radius, 0); ^ tessel_concave.c:131:5: warning: implicit declaration of function 'gen_cuspy_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_cuspy_sphere_tris(point2, point1, point0, fcenter, radius, plane_eq); ^ tessel_concave.c:134:5: warning: implicit declaration of function 'gen_cuspy_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_cuspy_sphere_tris(point0, point1, point2, fcenter, radius, plane_eq); ^ tessel_concave.c:143:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_cuspy_sphere_tris(pt0, pt1, pt2, center, radius, plane_eq) ^ tessel_concave.c:208:7: warning: implicit declaration of function 'gen_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_tris(points[0], points[1], points[2]); ^ tessel_concave.c:217:5: warning: implicit declaration of function 'find_line_seg_plane_int' is invalid in C99 [-Wimplicit-function-declaration] find_line_seg_plane_int(new_point1.Coord,points[i]->Coord,points[j]->Coord,plane_eq->coeff); ^ tessel_concave.c:231:7: warning: implicit declaration of function 'gen_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_tris(points[i], &new_point1, &new_point2); ^ tessel_concave.c:269:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_sphere_tris(pt0, pt1, pt2, center, radius, convex) ^ tessel_concave.c:345:5: warning: implicit declaration of function 'gen_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_tris(points[0], points[1], points[2]); ^ 14 warnings generated. /nxb-bin/usr/bin/cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing -c tessel_torus.c tessel_torus.c:22:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] get_full_torus_mesh(sph, num_sph, torus, num_torus, flip, atom_id) ^ tessel_torus.c:41:3: warning: implicit declaration of function 'find_plane_eq' is invalid in C99 [-Wimplicit-function-declaration] find_plane_eq(torus[0].vt.Coord,torus[1].vt.Coord,torus[2].vt.Coord,plane_eq); ^ tessel_torus.c:52:9: warning: implicit declaration of function 'gen_flipped_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_flipped_sphere_tris(&torus[t_index], &sph[next_s_index], &sph[s_index], atom_id, flip); ^ tessel_torus.c:56:9: warning: implicit declaration of function 'gen_flipped_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_flipped_sphere_tris(&sph[s_index], &torus[t_index], &torus[next_t_index], atom_id, flip); ^ tessel_torus.c:74:9: warning: implicit declaration of function 'gen_flipped_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_flipped_sphere_tris(&sph[s_index], &torus[t_index], &torus[next_t_index], atom_id, flip); ^ tessel_torus.c:87:9: warning: implicit declaration of function 'gen_flipped_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_flipped_sphere_tris(&torus[t_index], &sph[next_s_index], &sph[s_index], atom_id, flip); ^ tessel_torus.c:106:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] get_partial_torus_mesh(sph, num_sph, torus, num_torus, flip, atom_id) ^ tessel_torus.c:117:4: warning: implicit declaration of function 'find_plane_eq' is invalid in C99 [-Wimplicit-function-declaration] find_plane_eq(torus[0].vt.Coord,torus[1].vt.Coord,torus[2].vt.Coord,plane_eq); ^ tessel_torus.c:127:10: warning: implicit declaration of function 'gen_flipped_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_flipped_sphere_tris(&torus[t_index], &sph[next_s_index], &sph[s_index], atom_id, flip); ^ tessel_torus.c:131:10: warning: implicit declaration of function 'gen_flipped_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_flipped_sphere_tris(&sph[s_index], &torus[t_index], &torus[next_t_index], atom_id, flip); ^ tessel_torus.c:140:8: warning: implicit declaration of function 'gen_flipped_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_flipped_sphere_tris(&sph[s_index], &torus[i], &torus[i+1], atom_id, flip); ^ tessel_torus.c:145:8: warning: implicit declaration of function 'gen_flipped_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_flipped_sphere_tris(&torus[t_index], &sph[i+1], &sph[i], atom_id, flip); ^ tessel_torus.c:190:3: warning: implicit declaration of function 'gen_linear_recurse' is invalid in C99 [-Wimplicit-function-declaration] gen_linear_recurse(tor_pts[0][0],tor_pts[1][0],r[0],&j,fcenter,fradius,0); ^ tessel_torus.c:209:17: warning: implicit declaration of function 'gen_tris' is invalid in C99 [-Wimplicit-function-declaration] { if (flip) gen_tris(&r[l][m], &r[k][m+1], &r[k][m]); ^ tessel_torus.c:219:19: warning: implicit declaration of function 'gen_tris' is invalid in C99 [-Wimplicit-function-declaration] { if (flip) gen_tris(&r[l][m], &r[l][m+1], &r[k][j-1]); ^ 15 warnings generated. /nxb-bin/usr/bin/cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing surf.o io.o compute.o dual.o utils.o lp.o chull.o tessel_cases.o tessel_patches.o tessel_convex.o tessel_concave.o tessel_torus.o -o surf -lm gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden5.8/surf' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden5.8' =========================================================================== =======================<phase: run-depends >============================ ===> molden-5.8.2_4,1 depends on executable: gfortran10 - found ===> molden-5.8.2_4,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found =========================================================================== =======================<phase: stage >============================ ===> Staging for molden-5.8.2_4,1 ===> Generating temporary packing list (cd /wrkdirs/usr/ports/biology/molden/work/molden5.8 && install -s -m 555 molden /wrkdirs/usr/ports/biology/molden/work/stage/usr/local/bin) (cd /wrkdirs/usr/ports/biology/molden/work/molden5.8 && install -s -m 555 gmolden /wrkdirs/usr/ports/biology/molden/work/stage/usr/local/bin) (cd /wrkdirs/usr/ports/biology/molden/work/molden5.8/ambfor && install -s -m 555 ambfor /wrkdirs/usr/ports/biology/molden/work/stage//usr/local/bin) (cd /wrkdirs/usr/ports/biology/molden/work/molden5.8/surf && install -s -m 555 surf /wrkdirs/usr/ports/biology/molden/work/stage//usr/local/bin) (cd /wrkdirs/usr/ports/biology/molden/work/molden5.8/test && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /wrkdirs/usr/ports/biology/molden/work/stage/usr/local/share/molden/test) *** Error code 1 Stop. make: stopped in /usr/ports/biology/molden
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