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Date:      Tue, 26 Dec 2017 01:24:57 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 111mips-quarterly][biology/iolib] Failed for io_lib-1.14.9 in build
Message-ID:  <201712260124.vBQ1Ov79002731@beefy14.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     danilo@FreeBSD.org
Last committer: linimon@FreeBSD.org
Ident:          $FreeBSD: branches/2017Q4/biology/iolib/Makefile 440746 2017-05-13 03:35:51Z linimon $
Log URL:        http://beefy14.nyi.freebsd.org/data/111mips-quarterly/457150/logs/io_lib-1.14.9.log
Build URL:      http://beefy14.nyi.freebsd.org/build.html?mastername=111mips-quarterly&build=457150
Log:

=>> Building biology/iolib
build started at Tue Dec 26 01:16:35 UTC 2017
port directory: /usr/ports/biology/iolib
package name: io_lib-1.14.9
building for: FreeBSD 111mips-quarterly-job-20 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 mips
maintained by: danilo@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2017Q4/biology/iolib/Makefile 440746 2017-05-13 03:35:51Z linimon $
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Host OSVERSION: 1200052
Jail OSVERSION: 1101001
Job Id: 20

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--MAINTAINER--
danilo@FreeBSD.org
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--CONFIGURE_ARGS--
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--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iolib/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iolib/work  HOME=/wrkdirs/usr/ports/biology/iolib/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   io_lib-1.14.9 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.1.txz
[111mips-quarterly-job-20] Installing pkg-1.10.1...
[111mips-quarterly-job-20] Extracting pkg-1.10.1: .......... done
===>   io_lib-1.14.9 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of io_lib-1.14.9
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by io_lib-1.14.9 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by io_lib-1.14.9 for building
=> SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by io_lib-1.14.9 for building
===>  Extracting for io_lib-1.14.9
=> SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for io_lib-1.14.9
===>  Applying FreeBSD patches for io_lib-1.14.9
===========================================================================
=======================<phase: build-depends  >============================
===>   io_lib-1.14.9 depends on executable: autoconf-2.69 - not found
===>   Installing existing package /packages/All/autoconf-2.69_1.txz
[111mips-quarterly-job-20] Installing autoconf-2.69_1...
[111mips-quarterly-job-20] `-- Installing autoconf-wrapper-20131203...
[111mips-quarterly-job-20] `-- Extracting autoconf-wrapper-20131203: ........ done
[111mips-quarterly-job-20] `-- Installing indexinfo-0.2.6...
[111mips-quarterly-job-20] `-- Extracting indexinfo-0.2.6: .... done
[111mips-quarterly-job-20] `-- Installing m4-1.4.18,1...
[111mips-quarterly-job-20] `-- Extracting m4-1.4.18,1: .......... done
[111mips-quarterly-job-20] `-- Installing perl5-5.24.3...
[111mips-quarterly-job-20] `-- Extracting perl5-5.24.3: .......... done
[111mips-quarterly-job-20] Extracting autoconf-2.69_1: .......... done
<snip>
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-misc_scf.lo -MD -MP -MF .deps/libstaden_read_la-misc_scf.Tpo -c misc_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-misc_scf.lo -MD -MP -MF .deps/libstaden_read_la-misc_scf.Tpo -c misc_scf.c -o libstaden_read_la-misc_scf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-misc_scf.Tpo .deps/libstaden_read_la-misc_scf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo -c read_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo -c read_scf.c -o libstaden_read_la-read_scf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-read_scf.Tpo .deps/libstaden_read_la-read_scf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-write_scf.lo -MD -MP -MF .deps/libstaden_read_la-write_scf.Tpo -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-write_scf.lo -MD -MP -MF .deps/libstaden_read_la-write_scf.Tpo -c write_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-write_scf.lo -MD -MP -MF .deps/libstaden_read_la-write_scf.Tpo -c write_scf.c -o libstaden_read_la-write_scf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-write_scf.Tpo .deps/libstaden_read_la-write_scf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c sff.c  -fPIC -DPIC -o .libs/libstaden_read_la-sff.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c sff.c -o libstaden_read_la-sff.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-sff.Tpo .deps/libstaden_read_la-sff.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c srf.c  -fPIC -DPIC -o .libs/libstaden_read_la-srf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c srf.c -o libstaden_read_la-srf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-srf.Tpo .deps/libstaden_read_la-srf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c array.c  -fPIC -DPIC -o .libs/libstaden_read_la-array.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c array.c -o libstaden_read_la-array.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-array.Tpo .deps/libstaden_read_la-array.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo -c compress.c  -fPIC -DPIC -o .libs/libstaden_read_la-compress.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo -c compress.c -o libstaden_read_la-compress.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-compress.Tpo .deps/libstaden_read_la-compress.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c error.c  -fPIC -DPIC -o .libs/libstaden_read_la-error.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c error.c -o libstaden_read_la-error.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-error.Tpo .deps/libstaden_read_la-error.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-files.lo -MD -MP -MF .deps/libstaden_read_la-files.Tpo -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-files.lo -MD -MP -MF .deps/libstaden_read_la-files.Tpo -c files.c  -fPIC -DPIC -o .libs/libstaden_read_la-files.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-files.lo -MD -MP -MF .deps/libstaden_read_la-files.Tpo -c files.c -o libstaden_read_la-files.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-files.Tpo .deps/libstaden_read_la-files.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c find.c  -fPIC -DPIC -o .libs/libstaden_read_la-find.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c find.c -o libstaden_read_la-find.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-find.Tpo .deps/libstaden_read_la-find.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-mach-io.lo -MD -MP -MF .deps/libstaden_read_la-mach-io.Tpo -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-mach-io.lo -MD -MP -MF .deps/libstaden_read_la-mach-io.Tpo -c mach-io.c  -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-mach-io.lo -MD -MP -MF .deps/libstaden_read_la-mach-io.Tpo -c mach-io.c -o libstaden_read_la-mach-io.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-mach-io.Tpo .deps/libstaden_read_la-mach-io.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-open_trace_file.lo -MD -MP -MF .deps/libstaden_read_la-open_trace_file.Tpo -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-open_trace_file.lo -MD -MP -MF .deps/libstaden_read_la-open_trace_file.Tpo -c open_trace_file.c  -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-open_trace_file.lo -MD -MP -MF .deps/libstaden_read_la-open_trace_file.Tpo -c open_trace_file.c -o libstaden_read_la-open_trace_file.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-open_trace_file.Tpo .deps/libstaden_read_la-open_trace_file.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-read_alloc.lo -MD -MP -MF .deps/libstaden_read_la-read_alloc.Tpo -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_alloc.lo -MD -MP -MF .deps/libstaden_read_la-read_alloc.Tpo -c read_alloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_alloc.lo -MD -MP -MF .deps/libstaden_read_la-read_alloc.Tpo -c read_alloc.c -o libstaden_read_la-read_alloc.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-strings.lo -MD -MP -MF .deps/libstaden_read_la-strings.Tpo -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-strings.lo -MD -MP -MF .deps/libstaden_read_la-strings.Tpo -c strings.c  -fPIC -DPIC -o .libs/libstaden_read_la-strings.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-strings.lo -MD -MP -MF .deps/libstaden_read_la-strings.Tpo -c strings.c -o libstaden_read_la-strings.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-traceType.lo -MD -MP -MF .deps/libstaden_read_la-traceType.Tpo -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-traceType.lo -MD -MP -MF .deps/libstaden_read_la-traceType.Tpo -c traceType.c  -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-traceType.lo -MD -MP -MF .deps/libstaden_read_la-traceType.Tpo -c traceType.c -o libstaden_read_la-traceType.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-xalloc.lo -MD -MP -MF .deps/libstaden_read_la-xalloc.Tpo -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-xalloc.lo -MD -MP -MF .deps/libstaden_read_la-xalloc.Tpo -c xalloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-xalloc.lo -MD -MP -MF .deps/libstaden_read_la-xalloc.Tpo -c xalloc.c -o libstaden_read_la-xalloc.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-vlen.lo -MD -MP -MF .deps/libstaden_read_la-vlen.Tpo -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-vlen.lo -MD -MP -MF .deps/libstaden_read_la-vlen.Tpo -c vlen.c  -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-vlen.lo -MD -MP -MF .deps/libstaden_read_la-vlen.Tpo -c vlen.c -o libstaden_read_la-vlen.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-hash_table.lo -MD -MP -MF .deps/libstaden_read_la-hash_table.Tpo -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-hash_table.lo -MD -MP -MF .deps/libstaden_read_la-hash_table.Tpo -c hash_table.c  -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-hash_table.lo -MD -MP -MF .deps/libstaden_read_la-hash_table.Tpo -c hash_table.c -o libstaden_read_la-hash_table.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-jenkins_lookup3.lo -MD -MP -MF .deps/libstaden_read_la-jenkins_lookup3.Tpo -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-jenkins_lookup3.lo -MD -MP -MF .deps/libstaden_read_la-jenkins_lookup3.Tpo -c jenkins_lookup3.c  -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-jenkins_lookup3.lo -MD -MP -MF .deps/libstaden_read_la-jenkins_lookup3.Tpo -c jenkins_lookup3.c -o libstaden_read_la-jenkins_lookup3.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-mFILE.lo -MD -MP -MF .deps/libstaden_read_la-mFILE.Tpo -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-mFILE.lo -MD -MP -MF .deps/libstaden_read_la-mFILE.Tpo -c mFILE.c  -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-mFILE.lo -MD -MP -MF .deps/libstaden_read_la-mFILE.Tpo -c mFILE.c -o libstaden_read_la-mFILE.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-pooled_alloc.lo -MD -MP -MF .deps/libstaden_read_la-pooled_alloc.Tpo -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-pooled_alloc.lo -MD -MP -MF .deps/libstaden_read_la-pooled_alloc.Tpo -c pooled_alloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-pooled_alloc.lo -MD -MP -MF .deps/libstaden_read_la-pooled_alloc.Tpo -c pooled_alloc.c -o libstaden_read_la-pooled_alloc.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-bam.lo -MD -MP -MF .deps/libstaden_read_la-bam.Tpo -c -o libstaden_read_la-bam.lo `test -f 'bam.c' || echo './'`bam.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-bam.lo -MD -MP -MF .deps/libstaden_read_la-bam.Tpo -c bam.c  -fPIC -DPIC -o .libs/libstaden_read_la-bam.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-bam.lo -MD -MP -MF .deps/libstaden_read_la-bam.Tpo -c bam.c -o libstaden_read_la-bam.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-sam_header.lo -MD -MP -MF .deps/libstaden_read_la-sam_header.Tpo -c -o libstaden_read_la-sam_header.lo `test -f 'sam_header.c' || echo './'`sam_header.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sam_header.lo -MD -MP -MF .deps/libstaden_read_la-sam_header.Tpo -c sam_header.c  -fPIC -DPIC -o .libs/libstaden_read_la-sam_header.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sam_header.lo -MD -MP -MF .deps/libstaden_read_la-sam_header.Tpo -c sam_header.c -o libstaden_read_la-sam_header.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-rANS_static.lo -MD -MP -MF .deps/libstaden_read_la-rANS_static.Tpo -c -o libstaden_read_la-rANS_static.lo `test -f 'rANS_static.c' || echo './'`rANS_static.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-rANS_static.lo -MD -MP -MF .deps/libstaden_read_la-rANS_static.Tpo -c rANS_static.c  -fPIC -DPIC -o .libs/libstaden_read_la-rANS_static.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-rANS_static.lo -MD -MP -MF .deps/libstaden_read_la-rANS_static.Tpo -c rANS_static.c -o libstaden_read_la-rANS_static.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_codecs.lo -MD -MP -MF .deps/libstaden_read_la-cram_codecs.Tpo -c -o libstaden_read_la-cram_codecs.lo `test -f 'cram_codecs.c' || echo './'`cram_codecs.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_codecs.lo -MD -MP -MF .deps/libstaden_read_la-cram_codecs.Tpo -c cram_codecs.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_codecs.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_codecs.lo -MD -MP -MF .deps/libstaden_read_la-cram_codecs.Tpo -c cram_codecs.c -o libstaden_read_la-cram_codecs.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_encode.lo -MD -MP -MF .deps/libstaden_read_la-cram_encode.Tpo -c -o libstaden_read_la-cram_encode.lo `test -f 'cram_encode.c' || echo './'`cram_encode.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_encode.lo -MD -MP -MF .deps/libstaden_read_la-cram_encode.Tpo -c cram_encode.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_encode.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_encode.lo -MD -MP -MF .deps/libstaden_read_la-cram_encode.Tpo -c cram_encode.c -o libstaden_read_la-cram_encode.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_decode.lo -MD -MP -MF .deps/libstaden_read_la-cram_decode.Tpo -c -o libstaden_read_la-cram_decode.lo `test -f 'cram_decode.c' || echo './'`cram_decode.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_decode.lo -MD -MP -MF .deps/libstaden_read_la-cram_decode.Tpo -c cram_decode.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_decode.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_decode.lo -MD -MP -MF .deps/libstaden_read_la-cram_decode.Tpo -c cram_decode.c -o libstaden_read_la-cram_decode.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF .deps/libstaden_read_la-cram_stats.Tpo -c -o libstaden_read_la-cram_stats.lo `test -f 'cram_stats.c' || echo './'`cram_stats.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF .deps/libstaden_read_la-cram_stats.Tpo -c cram_stats.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_stats.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF .deps/libstaden_read_la-cram_stats.Tpo -c cram_stats.c -o libstaden_read_la-cram_stats.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_stats.Tpo .deps/libstaden_read_la-cram_stats.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c -o libstaden_read_la-cram_io.lo `test -f 'cram_io.c' || echo './'`cram_io.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c cram_io.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_io.o
cram_io.c: In function 'paranoid_fclose':
cram_io.c:2292: warning: implicit declaration of function 'fsync'
cram_io.c: In function 'cram_populate_ref':
cram_io.c:2903: warning: implicit declaration of function 'unlink'
cram_io.c: In function 'full_path':
cram_io.c:4288: warning: implicit declaration of function 'getcwd'
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c cram_io.c -o libstaden_read_la-cram_io.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_io.Tpo .deps/libstaden_read_la-cram_io.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF .deps/libstaden_read_la-cram_index.Tpo -c -o libstaden_read_la-cram_index.lo `test -f 'cram_index.c' || echo './'`cram_index.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF .deps/libstaden_read_la-cram_index.Tpo -c cram_index.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_index.o
cram_index.c: In function 'cram_index_load_private':
cram_index.c:183: warning: 'e.nseq' is used uninitialized in this function
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF .deps/libstaden_read_la-cram_index.Tpo -c cram_index.c -o libstaden_read_la-cram_index.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_index.Tpo .deps/libstaden_read_la-cram_index.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c -o libstaden_read_la-zfio.lo `test -f 'zfio.c' || echo './'`zfio.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c zfio.c  -fPIC -DPIC -o .libs/libstaden_read_la-zfio.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c zfio.c -o libstaden_read_la-zfio.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-zfio.Tpo .deps/libstaden_read_la-zfio.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c -o libstaden_read_la-dstring.lo `test -f 'dstring.c' || echo './'`dstring.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c dstring.c  -fPIC -DPIC -o .libs/libstaden_read_la-dstring.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c dstring.c -o libstaden_read_la-dstring.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-dstring.Tpo .deps/libstaden_read_la-dstring.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF .deps/libstaden_read_la-string_alloc.Tpo -c -o libstaden_read_la-string_alloc.lo `test -f 'string_alloc.c' || echo './'`string_alloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF .deps/libstaden_read_la-string_alloc.Tpo -c string_alloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-string_alloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF .deps/libstaden_read_la-string_alloc.Tpo -c string_alloc.c -o libstaden_read_la-string_alloc.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-string_alloc.Tpo .deps/libstaden_read_la-string_alloc.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c -o libstaden_read_la-md5.lo `test -f 'md5.c' || echo './'`md5.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c md5.c  -fPIC -DPIC -o .libs/libstaden_read_la-md5.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c md5.c -o libstaden_read_la-md5.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-md5.Tpo .deps/libstaden_read_la-md5.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c -o libstaden_read_la-crc32.lo `test -f 'crc32.c' || echo './'`crc32.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c crc32.c  -fPIC -DPIC -o .libs/libstaden_read_la-crc32.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c crc32.c -o libstaden_read_la-crc32.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-crc32.Tpo .deps/libstaden_read_la-crc32.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c -o libstaden_read_la-scram.lo `test -f 'scram.c' || echo './'`scram.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c scram.c  -fPIC -DPIC -o .libs/libstaden_read_la-scram.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c scram.c -o libstaden_read_la-scram.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-scram.Tpo .deps/libstaden_read_la-scram.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c -o libstaden_read_la-thread_pool.lo `test -f 'thread_pool.c' || echo './'`thread_pool.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c  -fPIC -DPIC -o .libs/libstaden_read_la-thread_pool.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c -o libstaden_read_la-thread_pool.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-thread_pool.Tpo .deps/libstaden_read_la-thread_pool.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c -o libstaden_read_la-binning.lo `test -f 'binning.c' || echo './'`binning.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c binning.c  -fPIC -DPIC -o .libs/libstaden_read_la-binning.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c binning.c -o libstaden_read_la-binning.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-binning.Tpo .deps/libstaden_read_la-binning.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF .deps/libstaden_read_la-cram_bambam.Tpo -c -o libstaden_read_la-cram_bambam.lo `test -f 'cram_bambam.c' || echo './'`cram_bambam.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF .deps/libstaden_read_la-cram_bambam.Tpo -c cram_bambam.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_bambam.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF .deps/libstaden_read_la-cram_bambam.Tpo -c cram_bambam.c -o libstaden_read_la-cram_bambam.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_bambam.Tpo .deps/libstaden_read_la-cram_bambam.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-bgzip.lo -MD -MP -MF .deps/libstaden_read_la-bgzip.Tpo -c -o libstaden_read_la-bgzip.lo `test -f 'bgzip.c' || echo './'`bgzip.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-bgzip.lo -MD -MP -MF .deps/libstaden_read_la-bgzip.Tpo -c bgzip.c  -fPIC -DPIC -o .libs/libstaden_read_la-bgzip.o
bgzip.c: In function 'gzi_index_dump':
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long unsigned int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long unsigned int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long unsigned int')
gmake[3]: *** [Makefile:1014: libstaden_read_la-bgzip.lo] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9/io_lib'
gmake[2]: *** [Makefile:746: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9'
gmake[1]: *** [Makefile:491: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/iolib



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