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Date:      Tue, 02 Jun 2015 10:05:39 +0000
From:      bugzilla-noreply@freebsd.org
To:        freebsd-ports-bugs@FreeBSD.org
Subject:   [Bug 200590] science/hdf5: with FORTRAN option failed to build
Message-ID:  <bug-200590-13@https.bugs.freebsd.org/bugzilla/>

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=200590

            Bug ID: 200590
           Summary: science/hdf5: with FORTRAN option failed to build
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Some People
          Priority: ---
         Component: Individual Port(s)
          Assignee: sunpoet@FreeBSD.org
          Reporter: fmysh@iijmio-mail.jp
             Flags: maintainer-feedback?(sunpoet@FreeBSD.org)
          Assignee: sunpoet@FreeBSD.org

Created attachment 157369
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=157369&action=edit
patch for Makefile

science/hdf5 with FORTRAN option depends on lang/gcc48 for gfortran.
Build process fails trying to link with not /usr/local/lib/gcc48/libgcc_s.so.1
but /usr/lib/libgcc_s.so.1.

# make
(snip)
Making all in fortran
Making all in src
  FC       H5test_kind_STORAGE_SIZE.o
  FCLD     H5test_kind
/usr/local/lib/gcc48/libgfortran.so: undefined reference to `__getf2@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to
`__floatunditf@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to
`__subtf3@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to
`__multf3@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to
`__unordtf2@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to `__lttf2@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to
`__addtf3@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to `__gttf2@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to
`__divtf3@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to `__letf2@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to `__netf2@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to
`__floatditf@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to
`__trunctfdf2@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to `__eqtf2@GCC_4.6.0'
/usr/local/lib/gcc48/libgfortran.so: undefined reference to
`__floatsitf@GCC_4.6.0'
collect2: error: ld returned 1 exit status
*** [H5test_kind] Error code 1

Stop in /usr//ports/science/hdf5/work/hdf5-1.8.15/fortran/src.
*** [all-recursive] Error code 1

Stop in /usr/ports/science/hdf5/work/hdf5-1.8.15/fortran.
*** [all-recursive] Error code 1

Stop in /usr/ports/science/hdf5/work/hdf5-1.8.15.
*** [do-build] Error code 1

Stop in /usr/ports/science/hdf5.
*** [stage] Error code 1

Stop in /usr/ports/science/hdf5.


Generated Makefiles by configure have -L/usr/lib explicitly before
-L/usr/local/lib/gcc48. They come from CONFIGURE_ARGS=--with-zlib=/usr.
As zlib is enabled by default, This is unnecessary.
Removing the argument cleared the problem.

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