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Date:      Mon, 15 Apr 2019 22:11:36 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120armv6-quarterly][biology/ncbi-blast+] Failed for ncbi-blast+-2.8.1_2 in build
Message-ID:  <201904152211.x3FMBaNT058219@beefy15.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Last committer: sunpoet@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q2/biology/ncbi-blast+/Makefile 492534 2019-02-09 23:25:36Z sunpoet $
Log URL:        http://beefy15.nyi.freebsd.org/data/120armv6-quarterly/498627/logs/ncbi-blast+-2.8.1_2.log
Build URL:      http://beefy15.nyi.freebsd.org/build.html?mastername=120armv6-quarterly&build=498627
Log:

=>> Building biology/ncbi-blast+
build started at Mon Apr 15 19:23:54 UTC 2019
port directory: /usr/ports/biology/ncbi-blast+
package name: ncbi-blast+-2.8.1_2
building for: FreeBSD 120armv6-quarterly-job-23 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm
maintained by: jwb@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q2/biology/ncbi-blast+/Makefile 492534 2019-02-09 23:25:36Z sunpoet $
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Host OSVERSION: 1300009
Jail OSVERSION: 1200086
Job Id: 23

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--MAINTAINER--
jwb@FreeBSD.org
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--CONFIGURE_ARGS--
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=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ncbi-blast+-2.8.1_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[120armv6-quarterly-job-23] Installing pkg-1.10.5_5...
[120armv6-quarterly-job-23] Extracting pkg-1.10.5_5: .......... done
===>   ncbi-blast+-2.8.1_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ncbi-blast+-2.8.1_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.8.1_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.8.1_2 for building
=> SHA256 Checksum OK for ncbi-blast-2.8.1+-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
<snip>
/bin/rm -f libvariation.a .libvariation.a.stamp
ar cr libvariation.a variation__.o variation___.o  
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib
/bin/ln -f libvariation.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvariation.a
/bin/ln -f .variation.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.variation.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation'
/usr/local/bin/gmake -C macro -w  all_r  ||  exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro'
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in  ||  /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile
cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro  &&  /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh macro all
Platform not defined for FreeBSD arm -- please fix me
/usr/local/bin/gmake -w -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro TMPL=macro -w export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro TMPL=macro -w all
/usr/local/bin/gmake -w -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro'
gmake[5]: Nothing to be done for 'all'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro'
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::__cxx11::string&, const string&, const string&)':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
     size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase);
                                                                                    ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
     size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase);
                                                                                    ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
             pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase);
                                                                                                       ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
             pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase);
                                                                                                       ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
             pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase);
                                                                                           ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
             pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase);
                                                                                           ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_ReplaceNocase(std::__cxx11::string&, const string&, const string&)':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
     size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase);
                                                                                    ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
     size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase);
                                                                                    ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
         pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase);
                                                                                                   ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations]
         pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase);
                                                                                                   ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41,
                 from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here
 SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
           ^~~~
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:158:
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetConstraintString(ncbi::objects::CString_constraint::ECase) const':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp:479:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetCompareString(const ncbi::objects::CMatchString&, ncbi::objects::CString_constraint::ECase) const':
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp:513:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
qemu: uncaught target signal 11 (Segmentation fault) - core dumped
g++8: internal compiler error: Segmentation fault signal terminated program cc1plus
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/>; for instructions.
gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.rules:88: macro__.o] Error 4
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro___.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp.
/usr/local/bin/g++8  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -pipe  -Wl,-rpath=/usr/local/lib/gcc8  -Wl,-rpath=/usr/local/lib/gcc8  -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/include  /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o 
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro'
FAILED: src/objects/macro/Makefile.macro.lib
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro'
/bin/rm -f libmacro.a .macro.dep .libmacro.a.stamp
/bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmacro.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.macro.dep \
    /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmacro-static.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.macro-static.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_l:305: all.nonusr] Error 2
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ncbi-blast+



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