Date: Thu, 3 Nov 2016 06:59:52 GMT From: pkg-fallout@FreeBSD.org To: dbn@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 101i386-default][math/R-cran-car] Failed for R-cran-car-2.1.3 in package Message-ID: <201611030659.uA36xq8C066552@beefy5.nyi.freebsd.org>
next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: dbn@FreeBSD.org Last committer: dbn@FreeBSD.org Ident: $FreeBSD: head/math/R-cran-car/Makefile 420249 2016-08-15 16:31:39Z dbn $ Log URL: http://beefy5.nyi.freebsd.org/data/101i386-default/425183/logs/R-cran-car-2.1.3.log Build URL: http://beefy5.nyi.freebsd.org/build.html?mastername=101i386-default&build=425183 Log: ====>> Building math/R-cran-car build started at Thu Nov 3 06:58:28 UTC 2016 port directory: /usr/ports/math/R-cran-car building for: FreeBSD 101i386-default-job-16 10.1-RELEASE-p42 FreeBSD 10.1-RELEASE-p42 i386 maintained by: dbn@FreeBSD.org Makefile ident: $FreeBSD: head/math/R-cran-car/Makefile 420249 2016-08-15 16:31:39Z dbn $ Poudriere version: 3.1.14 Host OSVERSION: 1200010 Jail OSVERSION: 1001000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.1-RELEASE-p42 UNAME_r=10.1-RELEASE-p42 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/101i386-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-car-2.1.3 OSREL=10.1 _OSRELEASE=10.1-RELEASE-p42 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/101i386-default/ref/.p/pool MASTERNAME=101i386-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1001000 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-car/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-car/work HOME=/wrkdirs/usr/ports/math/R-cran-car/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-car/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-car/work HOME=/wrkdirs/usr/ports/math/R-cran-car/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/car OSREL=10.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/car" EXAMPLESDIR="share/examples/car" DATADIR="share/car" WWWDIR="www/car" ETCDIR="etc/car" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/car DOCSDIR=/usr/local/share/doc/car EXAMPLESDIR=/usr/local/share/examples/car WWWDIR=/usr/local/www/car ETCDIR=/usr/local/etc/car --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-car-2.1.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.2.txz [101i386-default-job-16] Installing pkg-1.9.2... [101i386-default-job-16] Extracting pkg-1.9.2: .......... done ===> R-cran-car-2.1.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-car-2.1.3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-car-2.1.3 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-car-2.1.3 for building => SHA256 Checksum OK for car_2.1-3.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-car-2.1.3 for building ===> Extracting for R-cran-car-2.1.3 => SHA256 Checksum OK for car_2.1-3.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-car-2.1.3 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-car-2.1.3 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.3.2_1.txz [101i386-default-job-16] Installing R-3.3.2_1... [101i386-default-job-16] `-- Installing indexinfo-0.2.6... [101i386-default-job-16] `-- Extracting indexinfo-0.2.6: .... done [101i386-default-job-16] `-- Installing libXt-1.1.5,1... [101i386-default-job-16] | `-- Installing xproto-7.0.28... [101i386-default-job-16] | `-- Extracting xproto-7.0.28: .......... done [101i386-default-job-16] | `-- Installing libSM-1.2.2_3,1... [101i386-default-job-16] | | `-- Installing libICE-1.0.9_1,1... [101i386-default-job-16] | | `-- Extracting libICE-1.0.9_1,1: .......... done [101i386-default-job-16] | `-- Extracting libSM-1.2.2_3,1: .......... done [101i386-default-job-16] | `-- Installing libX11-1.6.4,1... [101i386-default-job-16] | | `-- Installing kbproto-1.0.7... [101i386-default-job-16] | | `-- Extracting kbproto-1.0.7: .......... done [101i386-default-job-16] | | `-- Installing libXdmcp-1.1.2... [101i386-default-job-16] | | `-- Extracting libXdmcp-1.1.2: ......... done [101i386-default-job-16] | | `-- Installing libxcb-1.11.1... [101i386-default-job-16] | | `-- Installing libxml2-2.9.4... [101i386-default-job-16] | | `-- Extracting libxml2-2.9.4: .......... done [101i386-default-job-16] | | `-- Installing libpthread-stubs-0.3_6... [101i386-default-job-16] | | `-- Extracting libpthread-stubs-0.3_6: ..... done [101i386-default-job-16] | | `-- Installing libXau-1.0.8_3... [101i386-default-job-16] | | `-- Extracting libXau-1.0.8_3: .......... done [101i386-default-job-16] | | `-- Extracting libxcb-1.11.1: .......... done [101i386-default-job-16] | `-- Extracting libX11-1.6.4,1: .......... done [101i386-default-job-16] `-- Extracting libXt-1.1.5,1: .......... done [101i386-default-job-16] `-- Installing pango-1.38.0_1... [101i386-default-job-16] | `-- Installing encodings-1.0.4_3,1... [101i386-default-job-16] | | `-- Installing font-util-1.3.1... [101i386-default-job-16] | | `-- Extracting font-util-1.3.1: .......... done [101i386-default-job-16] | `-- Extracting encodings-1.0.4_3,1: .......... done [101i386-default-job-16] | `-- Installing fontconfig-2.12.1,1... [101i386-default-job-16] | | `-- Installing expat-2.2.0... [101i386-default-job-16] | | `-- Extracting expat-2.2.0: .......... done [101i386-default-job-16] | | `-- Installing freetype2-2.6.3... [101i386-default-job-16] | | `-- Extracting freetype2-2.6.3: .......... done [101i386-default-job-16] | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/share/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/share/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded [101i386-default-job-16] | `-- Installing libXft-2.3.2_1... [101i386-default-job-16] | | `-- Installing libXrender-0.9.10... [101i386-default-job-16] | | `-- Installing renderproto-0.11.1... [101i386-default-job-16] | | `-- Extracting renderproto-0.11.1: .... done [101i386-default-job-16] | | `-- Extracting libXrender-0.9.10: .......... done [101i386-default-job-16] | `-- Extracting libXft-2.3.2_1: ......... done [101i386-default-job-16] | `-- Installing harfbuzz-1.3.2... [101i386-default-job-16] | | `-- Installing cairo-1.14.6_1,2... [101i386-default-job-16] | | `-- Installing glproto-1.4.17... <snip> [101i386-default-job-16] | `-- Extracting tcl86-8.6.6: .......... done [101i386-default-job-16] `-- Extracting tk86-8.6.6: .......... done [101i386-default-job-16] `-- Installing libXmu-1.1.2_3,1... [101i386-default-job-16] `-- Extracting libXmu-1.1.2_3,1: .......... done [101i386-default-job-16] Extracting R-3.3.2_1: .......... done Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from perl5-5.20.3_15: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from gcc-4.8.5_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc48 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from ca_root_nss-3.27.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.13_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. ===> R-cran-car-2.1.3 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-car-2.1.3 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-car-2.1.3 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-car-2.1.3 depends on package: R-cran-pbkrtest>=0.3.2 - not found ===> Installing existing package /packages/All/R-cran-pbkrtest-0.4.6.txz [101i386-default-job-16] Installing R-cran-pbkrtest-0.4.6... [101i386-default-job-16] `-- Installing R-cran-lme4-1.1.12... [101i386-default-job-16] | `-- Installing R-cran-Rcpp-0.12.7... [101i386-default-job-16] | `-- Extracting R-cran-Rcpp-0.12.7: .......... done [101i386-default-job-16] | `-- Installing R-cran-nloptr-1.0.4... [101i386-default-job-16] | | `-- Installing nlopt-2.4.2_1... [101i386-default-job-16] | | `-- Installing py27-numpy-1.11.2,1... [101i386-default-job-16] | | | `-- Installing py27-setuptools27-28.1.0... [101i386-default-job-16] | | | `-- Extracting py27-setuptools27-28.1.0: .......... done [101i386-default-job-16] | | | `-- Installing openblas-0.2.18_1,1... [101i386-default-job-16] | | | `-- Extracting openblas-0.2.18_1,1: ......... done [101i386-default-job-16] | | | `-- Installing suitesparse-4.0.2_4... [101i386-default-job-16] | | | `-- Extracting suitesparse-4.0.2_4: .......... done [101i386-default-job-16] | | | `-- Installing blas-3.5.0_3... [101i386-default-job-16] | | | `-- Extracting blas-3.5.0_3: ....... done [101i386-default-job-16] | | | `-- Installing lapack-3.5.0... [101i386-default-job-16] | | | `-- Extracting lapack-3.5.0: .......... done [101i386-default-job-16] | | | `-- Installing cblas-1.0_4... [101i386-default-job-16] | | | `-- Extracting cblas-1.0_4: ......... done [101i386-default-job-16] | | `-- Extracting py27-numpy-1.11.2,1: .......... done [101i386-default-job-16] | | `-- Installing guile2-2.0.11_3... [101i386-default-job-16] | | | `-- Installing libltdl-2.4.6... [101i386-default-job-16] | | | `-- Extracting libltdl-2.4.6: .......... done [101i386-default-job-16] | | | `-- Installing boehm-gc-threaded-7.6.0_1... [101i386-default-job-16] | | | `-- Installing boehm-gc-7.6.0... [101i386-default-job-16] | | | `-- Extracting boehm-gc-7.6.0: .......... done [101i386-default-job-16] | | | `-- Extracting boehm-gc-threaded-7.6.0_1: .......... done [101i386-default-job-16] | | | `-- Installing libunistring-0.9.6... [101i386-default-job-16] | | | `-- Extracting libunistring-0.9.6: .......... done [101i386-default-job-16] | | `-- Extracting guile2-2.0.11_3: .......... done [101i386-default-job-16] | | `-- Extracting nlopt-2.4.2_1: .......... done [101i386-default-job-16] | `-- Extracting R-cran-nloptr-1.0.4: .......... done [101i386-default-job-16] | `-- Installing R-cran-minqa-1.2.4... [101i386-default-job-16] | `-- Extracting R-cran-minqa-1.2.4: .......... done [101i386-default-job-16] | `-- Installing R-cran-RcppEigen-0.3.2.9.0... [101i386-default-job-16] | `-- Extracting R-cran-RcppEigen-0.3.2.9.0: .......... done [101i386-default-job-16] `-- Extracting R-cran-lme4-1.1.12: .......... done [101i386-default-job-16] Extracting R-cran-pbkrtest-0.4.6: .......... done Message from cblas-1.0_4: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> R-cran-car-2.1.3 depends on package: R-cran-pbkrtest>=0.3.2 - found ===> Returning to build of R-cran-car-2.1.3 ===> R-cran-car-2.1.3 depends on package: R-cran-quantreg>0 - not found ===> Installing existing package /packages/All/R-cran-quantreg-5.29.txz [101i386-default-job-16] Installing R-cran-quantreg-5.29... [101i386-default-job-16] `-- Installing R-cran-SparseM-1.72... [101i386-default-job-16] `-- Extracting R-cran-SparseM-1.72: .......... done [101i386-default-job-16] `-- Installing R-cran-MatrixModels-0.4.1... [101i386-default-job-16] `-- Extracting R-cran-MatrixModels-0.4.1: .......... done [101i386-default-job-16] Extracting R-cran-quantreg-5.29: .......... done ===> R-cran-car-2.1.3 depends on package: R-cran-quantreg>0 - found ===> Returning to build of R-cran-car-2.1.3 ===> R-cran-car-2.1.3 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-car-2.1.3 ===> Generating temporary packing list * installing *source* package 'car' ... ** package 'car' successfully unpacked and MD5 sums checked ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (car) ====> Compressing man pages (compress-man) =========================================================================== =======================<phase: package >============================ ===> Building package for R-cran-car-2.1.3 pkg-static: Unable to access file /wrkdirs/usr/ports/math/R-cran-car/work/stage/usr/local/lib/R/library/car/html/R.css: No such file or directory *** Error code 1 Stop. make: stopped in /usr/ports/math/R-cran-car
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201611030659.uA36xq8C066552>