Date: Thu, 3 Nov 2016 09:44:04 GMT From: pkg-fallout@FreeBSD.org To: thierry@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 101amd64-default][textproc/R-cran-R2HTML] Failed for R-cran-R2HTML-2.3.2 in package Message-ID: <201611030944.uA39i4Vh074876@beefy6.nyi.freebsd.org>
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Maintainer: thierry@FreeBSD.org Last committer: thierry@FreeBSD.org Ident: $FreeBSD: head/textproc/R-cran-R2HTML/Makefile 417531 2016-06-26 15:17:31Z thierry $ Log URL: http://beefy6.nyi.freebsd.org/data/101amd64-default/425183/logs/R-cran-R2HTML-2.3.2.log Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=101amd64-default&build=425183 Log: ====>> Building textproc/R-cran-R2HTML build started at Thu Nov 3 09:43:03 UTC 2016 port directory: /usr/ports/textproc/R-cran-R2HTML building for: FreeBSD 101amd64-default-job-22 10.1-RELEASE-p42 FreeBSD 10.1-RELEASE-p42 amd64 maintained by: thierry@FreeBSD.org Makefile ident: $FreeBSD: head/textproc/R-cran-R2HTML/Makefile 417531 2016-06-26 15:17:31Z thierry $ Poudriere version: 3.1.14 Host OSVERSION: 1200010 Jail OSVERSION: 1001000 ---Begin Environment--- SHELL=/bin/csh UNAME_v=FreeBSD 10.1-RELEASE-p42 UNAME_r=10.1-RELEASE-p42 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 ARCH=amd64 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/101amd64-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-R2HTML-2.3.2 OSREL=10.1 _OSRELEASE=10.1-RELEASE-p42 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/101amd64-default/ref/.p/pool HAVE_COMPAT_IA32_KERN=YES OPSYS=FreeBSD MASTERNAME=101amd64-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1001000 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/textproc/R-cran-R2HTML/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/textproc/R-cran-R2HTML/work HOME=/wrkdirs/usr/ports/textproc/R-cran-R2HTML/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/textproc/R-cran-R2HTML/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/textproc/R-cran-R2HTML/work HOME=/wrkdirs/usr/ports/textproc/R-cran-R2HTML/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/R2HTML OSREL=10.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/R2HTML" EXAMPLESDIR="share/examples/R2HTML" DATADIR="share/R2HTML" WWWDIR="www/R2HTML" ETCDIR="etc/R2HTML" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/R2HTML DOCSDIR=/usr/local/share/doc/R2HTML EXAMPLESDIR=/usr/local/share/examples/R2HTML WWWDIR=/usr/local/www/R2HTML ETCDIR=/usr/local/etc/R2HTML --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-R2HTML-2.3.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.2.txz [101amd64-default-job-22] Installing pkg-1.9.2... [101amd64-default-job-22] Extracting pkg-1.9.2: .......... done ===> R-cran-R2HTML-2.3.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-R2HTML-2.3.2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-R2HTML-2.3.2 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-R2HTML-2.3.2 for building => SHA256 Checksum OK for R2HTML_2.3.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-R2HTML-2.3.2 for building ===> Extracting for R-cran-R2HTML-2.3.2 => SHA256 Checksum OK for R2HTML_2.3.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-R2HTML-2.3.2 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-R2HTML-2.3.2 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.3.2_1.txz [101amd64-default-job-22] Installing R-3.3.2_1... [101amd64-default-job-22] `-- Installing indexinfo-0.2.6... [101amd64-default-job-22] `-- Extracting indexinfo-0.2.6: .... done [101amd64-default-job-22] `-- Installing libXt-1.1.5,1... [101amd64-default-job-22] | `-- Installing xproto-7.0.28... [101amd64-default-job-22] | `-- Extracting xproto-7.0.28: .......... done [101amd64-default-job-22] | `-- Installing libSM-1.2.2_3,1... [101amd64-default-job-22] | | `-- Installing libICE-1.0.9_1,1... [101amd64-default-job-22] | | `-- Extracting libICE-1.0.9_1,1: .......... done [101amd64-default-job-22] | `-- Extracting libSM-1.2.2_3,1: .......... done [101amd64-default-job-22] | `-- Installing libX11-1.6.4,1... [101amd64-default-job-22] | | `-- Installing kbproto-1.0.7... [101amd64-default-job-22] | | `-- Extracting kbproto-1.0.7: .......... done [101amd64-default-job-22] | | `-- Installing libXdmcp-1.1.2... [101amd64-default-job-22] | | `-- Extracting libXdmcp-1.1.2: ......... done [101amd64-default-job-22] | | `-- Installing libxcb-1.11.1... [101amd64-default-job-22] | | `-- Installing libxml2-2.9.4... [101amd64-default-job-22] | | `-- Extracting libxml2-2.9.4: .......... done [101amd64-default-job-22] | | `-- Installing libpthread-stubs-0.3_6... [101amd64-default-job-22] | | `-- Extracting libpthread-stubs-0.3_6: ..... done [101amd64-default-job-22] | | `-- Installing libXau-1.0.8_3... [101amd64-default-job-22] | | `-- Extracting libXau-1.0.8_3: .......... done [101amd64-default-job-22] | | `-- Extracting libxcb-1.11.1: .......... done [101amd64-default-job-22] | `-- Extracting libX11-1.6.4,1: .......... done [101amd64-default-job-22] `-- Extracting libXt-1.1.5,1: .......... done [101amd64-default-job-22] `-- Installing pango-1.38.0_1... [101amd64-default-job-22] | `-- Installing encodings-1.0.4_3,1... [101amd64-default-job-22] | | `-- Installing font-util-1.3.1... [101amd64-default-job-22] | | `-- Extracting font-util-1.3.1: .......... done [101amd64-default-job-22] | `-- Extracting encodings-1.0.4_3,1: .......... done [101amd64-default-job-22] | `-- Installing fontconfig-2.12.1,1... [101amd64-default-job-22] | | `-- Installing expat-2.2.0... [101amd64-default-job-22] | | `-- Extracting expat-2.2.0: .......... done [101amd64-default-job-22] | | `-- Installing freetype2-2.6.3... [101amd64-default-job-22] | | `-- Extracting freetype2-2.6.3: .......... done [101amd64-default-job-22] | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/share/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/share/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded [101amd64-default-job-22] | `-- Installing libXft-2.3.2_1... [101amd64-default-job-22] | | `-- Installing libXrender-0.9.10... [101amd64-default-job-22] | | `-- Installing renderproto-0.11.1... [101amd64-default-job-22] | | `-- Extracting renderproto-0.11.1: .... done [101amd64-default-job-22] | | `-- Extracting libXrender-0.9.10: .......... done [101amd64-default-job-22] | `-- Extracting libXft-2.3.2_1: ......... done [101amd64-default-job-22] | `-- Installing harfbuzz-1.3.2... [101amd64-default-job-22] | | `-- Installing cairo-1.14.6_1,2... [101amd64-default-job-22] | | `-- Installing glproto-1.4.17... [101amd64-default-job-22] | | `-- Extracting glproto-1.4.17: ...... done [101amd64-default-job-22] | | `-- Installing libEGL-11.2.2... [101amd64-default-job-22] | | | `-- Installing libdevq-0.0.2_1... [101amd64-default-job-22] | | | `-- Extracting libdevq-0.0.2_1: ..... done [101amd64-default-job-22] | | | `-- Installing libXdamage-1.1.4_3... <snip> [101amd64-default-job-22] | | `-- Extracting gnome_subr-1.0: . done [101amd64-default-job-22] | | `-- Installing gobject-introspection-1.46.0... [101amd64-default-job-22] | | | `-- Installing python2-2_3... [101amd64-default-job-22] | | | `-- Extracting python2-2_3: ...... done [101amd64-default-job-22] | | `-- Extracting gobject-introspection-1.46.0: .......... done [101amd64-default-job-22] | | `-- Installing gdbm-1.12... [101amd64-default-job-22] | | `-- Extracting gdbm-1.12: .......... done [101amd64-default-job-22] | | `-- Installing libdaemon-0.14_1... [101amd64-default-job-22] | | `-- Extracting libdaemon-0.14_1: .......... done [101amd64-default-job-22] | | `-- Installing dbus-glib-0.104... [101amd64-default-job-22] | | | `-- Installing dbus-1.8.20... ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. [101amd64-default-job-22] | | | `-- Extracting dbus-1.8.20: ......... done [101amd64-default-job-22] | | `-- Extracting dbus-glib-0.104: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. [101amd64-default-job-22] | | `-- Extracting avahi-app-0.6.31_5: .......... done [101amd64-default-job-22] | | `-- Installing gnutls-3.4.16... [101amd64-default-job-22] | | `-- Installing nettle-3.2... [101amd64-default-job-22] | | `-- Extracting nettle-3.2: .......... done [101amd64-default-job-22] | | `-- Installing libtasn1-4.9... [101amd64-default-job-22] | | `-- Extracting libtasn1-4.9: .......... done [101amd64-default-job-22] | | `-- Installing trousers-0.3.13_1... [101amd64-default-job-22] | | | `-- Installing tpm-emulator-0.7.4_1... ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. [101amd64-default-job-22] | | | `-- Extracting tpm-emulator-0.7.4_1: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. [101amd64-default-job-22] | | `-- Extracting trousers-0.3.13_1: .......... done [101amd64-default-job-22] | | `-- Installing p11-kit-0.23.2... [101amd64-default-job-22] | | `-- Extracting p11-kit-0.23.2: .......... done [101amd64-default-job-22] | | `-- Extracting gnutls-3.4.16: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. [101amd64-default-job-22] | `-- Extracting cups-2.2.1: .......... done [101amd64-default-job-22] | `-- Installing lcms2-2.7_2... [101amd64-default-job-22] | | `-- Installing jpeg-turbo-1.5.1... [101amd64-default-job-22] | | `-- Extracting jpeg-turbo-1.5.1: .......... done [101amd64-default-job-22] | | `-- Installing tiff-4.0.6_2... [101amd64-default-job-22] | | `-- Installing jbigkit-2.1_1... [101amd64-default-job-22] | | `-- Extracting jbigkit-2.1_1: .......... done [101amd64-default-job-22] | | `-- Extracting tiff-4.0.6_2: .......... done [101amd64-default-job-22] | `-- Extracting lcms2-2.7_2: .......... done [101amd64-default-job-22] | `-- Installing gsfonts-8.11_6... [101amd64-default-job-22] | `-- Extracting gsfonts-8.11_6: .......... done [101amd64-default-job-22] `-- Extracting ghostscript9-agpl-base-9.16_5: .......... done [101amd64-default-job-22] `-- Installing libXScrnSaver-1.2.2_3... [101amd64-default-job-22] | `-- Installing scrnsaverproto-1.2.2... [101amd64-default-job-22] | `-- Extracting scrnsaverproto-1.2.2: ... done [101amd64-default-job-22] `-- Extracting libXScrnSaver-1.2.2_3: .......... done [101amd64-default-job-22] `-- Installing tk86-8.6.6... [101amd64-default-job-22] | `-- Installing tcl86-8.6.6... [101amd64-default-job-22] | `-- Extracting tcl86-8.6.6: .......... done [101amd64-default-job-22] `-- Extracting tk86-8.6.6: .......... done [101amd64-default-job-22] `-- Installing libXmu-1.1.2_3,1... [101amd64-default-job-22] `-- Extracting libXmu-1.1.2_3,1: .......... done [101amd64-default-job-22] Extracting R-3.3.2_1: .......... done Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from perl5-5.20.3_15: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from gcc-4.8.5_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc48 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from ca_root_nss-3.27.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.13_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. ===> R-cran-R2HTML-2.3.2 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-R2HTML-2.3.2 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-R2HTML-2.3.2 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-R2HTML-2.3.2 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-R2HTML-2.3.2 ===> Generating temporary packing list * installing *source* package 'R2HTML' ... ** package 'R2HTML' successfully unpacked and MD5 sums checked ** R ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices Warning in file.copy(file.path(R.home("doc"), "html", "R.css"), outman) : problem copying /usr/local/share/doc/R/html/R.css to /wrkdirs/usr/ports/textproc/R-cran-R2HTML/work/stage/usr/local/lib/R/library/R2HTML/html/R.css: No such file or directory ** building package indices ** testing if installed package can be loaded * DONE (R2HTML) ====> Compressing man pages (compress-man) =========================================================================== =======================<phase: package >============================ ===> Building package for R-cran-R2HTML-2.3.2 pkg-static: Unable to access file /wrkdirs/usr/ports/textproc/R-cran-R2HTML/work/stage/usr/local/lib/R/library/R2HTML/html/R.css: No such file or directory *** Error code 1 Stop. make: stopped in /usr/ports/textproc/R-cran-R2HTML
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