Skip site navigation (1)Skip section navigation (2)
Date:      Sun, 27 Oct 2019 17:02:22 GMT
From:      pkg-fallout@FreeBSD.org
To:        sunpoet@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - 112amd64-default][databases/py-tiledb] Failed for py36-tiledb-0.4.4 in configure
Message-ID:  <201910271702.x9RH2MnL060985@beefy9.nyi.freebsd.org>

next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Last committer: sunpoet@FreeBSD.org
Ident:          $FreeBSD: head/databases/py-tiledb/Makefile 515145 2019-10-21 23:32:41Z sunpoet $
Log URL:        http://beefy9.nyi.freebsd.org/data/112amd64-default/515742/logs/py36-tiledb-0.4.4.log
Build URL:      http://beefy9.nyi.freebsd.org/build.html?mastername=112amd64-default&build=515742
Log:

=>> Building databases/py-tiledb
build started at Sun Oct 27 17:01:56 UTC 2019
port directory: /usr/ports/databases/py-tiledb
package name: py36-tiledb-0.4.4
building for: FreeBSD 112amd64-default-job-20 11.2-RELEASE-p15 FreeBSD 11.2-RELEASE-p15 amd64
maintained by: sunpoet@FreeBSD.org
Makefile ident:      $FreeBSD: head/databases/py-tiledb/Makefile 515145 2019-10-21 23:32:41Z sunpoet $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300047
Jail OSVERSION: 1102000
Job Id: 20

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1102000
UNAME_v=FreeBSD 11.2-RELEASE-p15
UNAME_r=11.2-RELEASE-p15
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/112amd64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/112amd64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=112amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/112amd64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py36
DEPENDS_ARGS=
MAKE_ARGS= FLAVOR=py36
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
sunpoet@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py36  XDG_CONFIG_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py36  HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/databases/py-tiledb/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py36  XDG_CONFIG_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py36  HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/databases/py-tiledb/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 55
 5"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.6m  PYTHON_LIBDIR=lib/python3.6  PYTHON_PLATFORM=freebsd11  PYTHON_SITELIBDIR=lib/python3.6/site-packages  PYTHON_SUFFIX=36  PYTHON_VER=3.6  PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/tiledb"  EXAMPLESDIR="share/examples/tiledb"  DATADIR="share/tiledb"  WWWDIR="www/tiledb"  ETCDIR="etc/tiledb"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/tiledb DOCSDIR=/usr/local/share/doc/tiledb EXAMPLESDIR=/usr/local/share/examples/tiledb  WWWDIR=/usr/local/www/tiledb ETCDIR=/usr/local/etc/tiledb
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=amd64
OPSYS=FreeBSD
_OSRELEASE=11.2-RELEASE-p15
OSREL=11.2
OSVERSION=1102000
PYTHONBASE=/usr/local
HAVE_COMPAT_IA32_KERN=YES
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py36-tiledb-0.4.4 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[112amd64-default-job-20] Installing pkg-1.12.0...
[112amd64-default-job-20] Extracting pkg-1.12.0: .......... done
===>   py36-tiledb-0.4.4 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py36-tiledb-0.4.4
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py36-tiledb-0.4.4 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py36-tiledb-0.4.4 for building
=> SHA256 Checksum OK for tiledb-0.4.4.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py36-tiledb-0.4.4 for building
===>  Extracting for py36-tiledb-0.4.4
=> SHA256 Checksum OK for tiledb-0.4.4.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py36-tiledb-0.4.4
===========================================================================
=======================<phase: build-depends  >============================
===>   py36-tiledb-0.4.4 depends on package: py36-setuptools_scm>=1.5.4 - not found
===>   Installing existing package /packages/All/py36-setuptools_scm-3.3.3.txz
[112amd64-default-job-20] Installing py36-setuptools_scm-3.3.3...
[112amd64-default-job-20] `-- Installing py36-setuptools-41.4.0...
[112amd64-default-job-20] |   `-- Installing python36-3.6.9...
[112amd64-default-job-20] |   | `-- Installing gettext-runtime-0.20.1...
[112amd64-default-job-20] |   |   `-- Installing indexinfo-0.3.1...
[112amd64-default-job-20] |   |   `-- Extracting indexinfo-0.3.1: .... done
[112amd64-default-job-20] |   | `-- Extracting gettext-runtime-0.20.1: .......... done
[112amd64-default-job-20] |   | `-- Installing libffi-3.2.1_3...
[112amd64-default-job-20] |   | `-- Extracting libffi-3.2.1_3: .......... done
[112amd64-default-job-20] |   | `-- Installing readline-8.0.0...
[112amd64-default-job-20] |   | `-- Extracting readline-8.0.0: .......... done
[112amd64-default-job-20] |   `-- Extracting python36-3.6.9: .......... done
[112amd64-default-job-20] `-- Extracting py36-setuptools-41.4.0: .......... done
[112amd64-default-job-20] Extracting py36-setuptools_scm-3.3.3: .......... done
=====
Message from python36-3.6.9:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py36-gdbm       databases/py-gdbm@py36
py36-sqlite3    databases/py-sqlite3@py36
py36-tkinter    x11-toolkits/py-tkinter@py36
===>   py36-tiledb-0.4.4 depends on package: py36-setuptools_scm>=1.5.4 - found
===>   Returning to build of py36-tiledb-0.4.4
===>   py36-tiledb-0.4.4 depends on package: py36-wheel>=0.30 - not found
===>   Installing existing package /packages/All/py36-wheel-0.30.0_1.txz
[112amd64-default-job-20] Installing py36-wheel-0.30.0_1...
[112amd64-default-job-20] Extracting py36-wheel-0.30.0_1: .......... done
===>   py36-tiledb-0.4.4 depends on package: py36-wheel>=0.30 - found
===>   Returning to build of py36-tiledb-0.4.4
===>   py36-tiledb-0.4.4 depends on package: py36-numpy>0 - not found
===>   Installing existing package /packages/All/py36-numpy-1.16.5_1,1.txz
[112amd64-default-job-20] Installing py36-numpy-1.16.5_1,1...
[112amd64-default-job-20] `-- Installing gcc9-9.2.0...
[112amd64-default-job-20] |   `-- Installing binutils-2.32_1,1...
[112amd64-default-job-20] |   `-- Extracting binutils-2.32_1,1: .......... done
[112amd64-default-job-20] |   `-- Installing gmp-6.1.2_1...
[112amd64-default-job-20] |   `-- Extracting gmp-6.1.2_1: .......... done
[112amd64-default-job-20] |   `-- Installing mpc-1.1.0_2...
[112amd64-default-job-20] |   | `-- Installing mpfr-4.0.2...
[112amd64-default-job-20] |   | `-- Extracting mpfr-4.0.2: .......... done
[112amd64-default-job-20] |   `-- Extracting mpc-1.1.0_2: ......... done
[112amd64-default-job-20] `-- Extracting gcc9-9.2.0: .......... done
[112amd64-default-job-20] `-- Installing openblas-0.2.20_10,1...
[112amd64-default-job-20] `-- Extracting openblas-0.2.20_10,1: ......... done
[112amd64-default-job-20] `-- Installing suitesparse-5.4.0_3...
[112amd64-default-job-20] |   `-- Installing metis-5.1.0_8...
[112amd64-default-job-20] |   `-- Extracting metis-5.1.0_8: .......... done
[112amd64-default-job-20] |   `-- Installing tbb-2019.8...
[112amd64-default-job-20] |   `-- Extracting tbb-2019.8: .......... done
[112amd64-default-job-20] `-- Extracting suitesparse-5.4.0_3: .......... done
[112amd64-default-job-20] Extracting py36-numpy-1.16.5_1,1: .......... done
=====
Message from gcc9-9.2.0:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc9

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   py36-tiledb-0.4.4 depends on package: py36-numpy>0 - found
===>   Returning to build of py36-tiledb-0.4.4
===>   py36-tiledb-0.4.4 depends on package: py36-setuptools>0 - found
===>   py36-tiledb-0.4.4 depends on file: /usr/local/bin/python3.6 - found
===>   py36-tiledb-0.4.4 depends on executable: cython-3.6 - not found
===>   Installing existing package /packages/All/py36-cython-0.29.13.txz
[112amd64-default-job-20] Installing py36-cython-0.29.13...
[112amd64-default-job-20] Extracting py36-cython-0.29.13: .......... done
===>   py36-tiledb-0.4.4 depends on executable: cython-3.6 - found
===>   Returning to build of py36-tiledb-0.4.4
===>   py36-tiledb-0.4.4 depends on package: py36-setuptools>0 - found
===>   py36-tiledb-0.4.4 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   py36-tiledb-0.4.4 depends on shared library: libtiledb.so - not found
===>   Installing existing package /packages/All/tiledb-1.6.3.txz
[112amd64-default-job-20] Installing tiledb-1.6.3...
[112amd64-default-job-20] `-- Installing catch-2.10.2...
[112amd64-default-job-20] `-- Extracting catch-2.10.2: .......... done
[112amd64-default-job-20] `-- Installing clipp-1.2.3...
[112amd64-default-job-20] `-- Extracting clipp-1.2.3: .... done
[112amd64-default-job-20] `-- Installing liblz4-1.9.2,1...
[112amd64-default-job-20] `-- Extracting liblz4-1.9.2,1: .......... done
[112amd64-default-job-20] `-- Installing spdlog-1.3.1_2...
[112amd64-default-job-20] |   `-- Installing libfmt-6.0.0...
[112amd64-default-job-20] |   `-- Extracting libfmt-6.0.0: .......... done
[112amd64-default-job-20] `-- Extracting spdlog-1.3.1_2: .......... done
[112amd64-default-job-20] `-- Installing zstd-1.4.3...
[112amd64-default-job-20] `-- Extracting zstd-1.4.3: .......... done
[112amd64-default-job-20] Extracting tiledb-1.6.3: .......... done
===>   py36-tiledb-0.4.4 depends on shared library: libtiledb.so - found (/usr/local/lib/libtiledb.so)
===>   Returning to build of py36-tiledb-0.4.4
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py36-tiledb-0.4.4
*** Signal 4

Stop.
make: stopped in /usr/ports/databases/py-tiledb



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201910271702.x9RH2MnL060985>