Date: Sat, 7 Jun 2014 01:54:42 +0000 (UTC) From: "Vanilla I. Shu" <vanilla@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r356870 - head/biology/p5-Bio-Graphics Message-ID: <201406070154.s571sgsk095615@svn.freebsd.org>
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Author: vanilla Date: Sat Jun 7 01:54:41 2014 New Revision: 356870 URL: http://svnweb.freebsd.org/changeset/ports/356870 QAT: https://qat.redports.org/buildarchive/r356870/ Log: Stagify, remove BROKEN. Modified: head/biology/p5-Bio-Graphics/Makefile head/biology/p5-Bio-Graphics/pkg-plist Modified: head/biology/p5-Bio-Graphics/Makefile ============================================================================== --- head/biology/p5-Bio-Graphics/Makefile Sat Jun 7 01:31:13 2014 (r356869) +++ head/biology/p5-Bio-Graphics/Makefile Sat Jun 7 01:54:41 2014 (r356870) @@ -13,7 +13,6 @@ COMMENT= Generate GD Images of Bio::Seq LICENSE= ART10 GPLv1 LICENSE_COMB= dual -BROKEN= not staged BUILD_DEPENDS= p5-Bio-SCF>=1.01:${PORTSDIR}/biology/p5-Bio-SCF \ p5-GD>=2.30:${PORTSDIR}/graphics/p5-GD \ p5-GD-SVG>=0.32:${PORTSDIR}/graphics/p5-GD-SVG \ @@ -24,110 +23,4 @@ RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 USE_PERL5= configure -MAN1= contig_draw.pl.1 \ - feature_draw.pl.1 \ - frend.pl.1 \ - search_overview.pl.1 -MAN3= Bio::Graphics.3 \ - Bio::Graphics::ConfiguratorI.3 \ - Bio::Graphics::DrawTransmembrane.3 \ - Bio::Graphics::Feature.3 \ - Bio::Graphics::FeatureBase.3 \ - Bio::Graphics::FeatureDir.3 \ - Bio::Graphics::FeatureFile.3 \ - Bio::Graphics::FeatureFile::Iterator.3 \ - Bio::Graphics::Glyph.3 \ - Bio::Graphics::Glyph::Factory.3 \ - Bio::Graphics::Glyph::alignment.3 \ - Bio::Graphics::Glyph::allele_tower.3 \ - Bio::Graphics::Glyph::anchored_arrow.3 \ - Bio::Graphics::Glyph::arrow.3 \ - Bio::Graphics::Glyph::box.3 \ - Bio::Graphics::Glyph::broken_line.3 \ - Bio::Graphics::Glyph::cds.3 \ - Bio::Graphics::Glyph::christmas_arrow.3 \ - Bio::Graphics::Glyph::crossbox.3 \ - Bio::Graphics::Glyph::dashed_line.3 \ - Bio::Graphics::Glyph::decorated_gene.3 \ - Bio::Graphics::Glyph::decorated_transcript.3 \ - Bio::Graphics::Glyph::diamond.3 \ - Bio::Graphics::Glyph::dna.3 \ - Bio::Graphics::Glyph::dot.3 \ - Bio::Graphics::Glyph::dumbbell.3 \ - Bio::Graphics::Glyph::ellipse.3 \ - Bio::Graphics::Glyph::ex.3 \ - Bio::Graphics::Glyph::extending_arrow.3 \ - Bio::Graphics::Glyph::fb_shmiggle.3 \ - Bio::Graphics::Glyph::fixedwidth.3 \ - Bio::Graphics::Glyph::flag.3 \ - Bio::Graphics::Glyph::gene.3 \ - Bio::Graphics::Glyph::generic.3 \ - Bio::Graphics::Glyph::graded_segments.3 \ - Bio::Graphics::Glyph::group.3 \ - Bio::Graphics::Glyph::hat.3 \ - Bio::Graphics::Glyph::heat_map.3 \ - Bio::Graphics::Glyph::heat_map_ideogram.3 \ - Bio::Graphics::Glyph::heterogeneous_segments.3 \ - Bio::Graphics::Glyph::hidden.3 \ - Bio::Graphics::Glyph::hybrid_plot.3 \ - Bio::Graphics::Glyph::ideogram.3 \ - Bio::Graphics::Glyph::image.3 \ - Bio::Graphics::Glyph::lightning.3 \ - Bio::Graphics::Glyph::line.3 \ - Bio::Graphics::Glyph::merge_parts.3 \ - Bio::Graphics::Glyph::merged_alignment.3 \ - Bio::Graphics::Glyph::minmax.3 \ - Bio::Graphics::Glyph::operon.3 \ - Bio::Graphics::Glyph::oval.3 \ - Bio::Graphics::Glyph::pairplot.3 \ - Bio::Graphics::Glyph::pentagram.3 \ - Bio::Graphics::Glyph::phylo_align.3 \ - Bio::Graphics::Glyph::pinsertion.3 \ - Bio::Graphics::Glyph::primers.3 \ - Bio::Graphics::Glyph::processed_transcript.3 \ - Bio::Graphics::Glyph::protein.3 \ - Bio::Graphics::Glyph::ragged_ends.3 \ - Bio::Graphics::Glyph::rainbow_gene.3 \ - Bio::Graphics::Glyph::redgreen_box.3 \ - Bio::Graphics::Glyph::redgreen_segment.3 \ - Bio::Graphics::Glyph::repeating_shape.3 \ - Bio::Graphics::Glyph::rndrect.3 \ - Bio::Graphics::Glyph::ruler_arrow.3 \ - Bio::Graphics::Glyph::saw_teeth.3 \ - Bio::Graphics::Glyph::scale.3 \ - Bio::Graphics::Glyph::segmented_keyglyph.3 \ - Bio::Graphics::Glyph::segments.3 \ - Bio::Graphics::Glyph::so_transcript.3 \ - Bio::Graphics::Glyph::span.3 \ - Bio::Graphics::Glyph::spectrogram.3 \ - Bio::Graphics::Glyph::splice_site.3 \ - Bio::Graphics::Glyph::stackedplot.3 \ - Bio::Graphics::Glyph::ternary_plot.3 \ - Bio::Graphics::Glyph::text_in_box.3 \ - Bio::Graphics::Glyph::three_letters.3 \ - Bio::Graphics::Glyph::tic_tac_toe.3 \ - Bio::Graphics::Glyph::toomany.3 \ - Bio::Graphics::Glyph::trace.3 \ - Bio::Graphics::Glyph::track.3 \ - Bio::Graphics::Glyph::transcript.3 \ - Bio::Graphics::Glyph::transcript2.3 \ - Bio::Graphics::Glyph::translation.3 \ - Bio::Graphics::Glyph::triangle.3 \ - Bio::Graphics::Glyph::two_bolts.3 \ - Bio::Graphics::Glyph::vista_plot.3 \ - Bio::Graphics::Glyph::wave.3 \ - Bio::Graphics::Glyph::weighted_arrow.3 \ - Bio::Graphics::Glyph::whiskerplot.3 \ - Bio::Graphics::Glyph::wiggle_box.3 \ - Bio::Graphics::Glyph::wiggle_density.3 \ - Bio::Graphics::Glyph::wiggle_xyplot.3 \ - Bio::Graphics::Glyph::xyplot.3 \ - Bio::Graphics::Panel.3 \ - Bio::Graphics::Pictogram.3 \ - Bio::Graphics::RendererI.3 \ - Bio::Graphics::Util.3 \ - Bio::Graphics::Wiggle.3 \ - Bio::Graphics::Wiggle::Loader.3 - -NO_STAGE= yes .include <bsd.port.mk> Modified: head/biology/p5-Bio-Graphics/pkg-plist ============================================================================== --- head/biology/p5-Bio-Graphics/pkg-plist Sat Jun 7 01:31:13 2014 (r356869) +++ head/biology/p5-Bio-Graphics/pkg-plist Sat Jun 7 01:54:41 2014 (r356870) @@ -4,6 +4,106 @@ bin/frend.pl bin/glyph_help.pl bin/render_msa.pl bin/search_overview.pl +%%PERL5_MAN3%%/Bio::Graphics.3.gz +%%PERL5_MAN3%%/Bio::Graphics::ConfiguratorI.3.gz +%%PERL5_MAN3%%/Bio::Graphics::DrawTransmembrane.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Feature.3.gz +%%PERL5_MAN3%%/Bio::Graphics::FeatureBase.3.gz +%%PERL5_MAN3%%/Bio::Graphics::FeatureDir.3.gz +%%PERL5_MAN3%%/Bio::Graphics::FeatureFile.3.gz +%%PERL5_MAN3%%/Bio::Graphics::FeatureFile::Iterator.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::Factory.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::alignment.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::allele_tower.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::anchored_arrow.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::arrow.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::box.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::broken_line.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::cds.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::christmas_arrow.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::crossbox.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::dashed_line.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::decorated_gene.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::decorated_transcript.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::diamond.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::dna.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::dot.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::dumbbell.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::ellipse.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::ex.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::extending_arrow.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::fb_shmiggle.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::fixedwidth.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::flag.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::gene.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::generic.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::graded_segments.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::group.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::hat.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::heat_map.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::heat_map_ideogram.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::heterogeneous_segments.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::hidden.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::hybrid_plot.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::ideogram.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::image.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::lightning.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::line.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::merge_parts.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::merged_alignment.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::minmax.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::operon.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::oval.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::pairplot.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::pentagram.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::phylo_align.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::pinsertion.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::primers.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::processed_transcript.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::protein.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::ragged_ends.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::rainbow_gene.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::redgreen_box.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::redgreen_segment.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::repeating_shape.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::rndrect.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::ruler_arrow.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::saw_teeth.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::scale.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::segmented_keyglyph.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::segments.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::so_transcript.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::span.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::spectrogram.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::splice_site.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::stackedplot.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::ternary_plot.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::text_in_box.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::three_letters.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::tic_tac_toe.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::toomany.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::trace.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::track.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::transcript.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::transcript2.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::translation.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::triangle.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::two_bolts.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::vista_plot.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::wave.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::weighted_arrow.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::whiskerplot.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_box.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_density.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_xyplot.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Glyph::xyplot.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Panel.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Pictogram.3.gz +%%PERL5_MAN3%%/Bio::Graphics::RendererI.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Util.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Wiggle.3.gz +%%PERL5_MAN3%%/Bio::Graphics::Wiggle::Loader.3.gz %%SITE_PERL%%/Bio/Graphics.pm %%SITE_PERL%%/Bio/Graphics/ConfiguratorI.pm %%SITE_PERL%%/Bio/Graphics/DrawTransmembrane.pm @@ -12,6 +112,7 @@ bin/search_overview.pl %%SITE_PERL%%/Bio/Graphics/FeatureDir.pm %%SITE_PERL%%/Bio/Graphics/FeatureFile.pm %%SITE_PERL%%/Bio/Graphics/FeatureFile/Iterator.pm +%%SITE_PERL%%/Bio/Graphics/GDWrapper.pm %%SITE_PERL%%/Bio/Graphics/Glyph.pm %%SITE_PERL%%/Bio/Graphics/Glyph/Factory.pm %%SITE_PERL%%/Bio/Graphics/Glyph/alignment.pm @@ -105,7 +206,6 @@ bin/search_overview.pl %%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_xyplot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/xyplot.pm %%SITE_PERL%%/Bio/Graphics/Layout.pm -%%SITE_PERL%%/Bio/Graphics/GDWrapper.pm %%SITE_PERL%%/Bio/Graphics/Panel.pm %%SITE_PERL%%/Bio/Graphics/Pictogram.pm %%SITE_PERL%%/Bio/Graphics/RendererI.pm @@ -113,10 +213,12 @@ bin/search_overview.pl %%SITE_PERL%%/Bio/Graphics/Wiggle.pm %%SITE_PERL%%/Bio/Graphics/Wiggle/Loader.pm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Graphics/.packlist -@dirrmtry %%SITE_PERL%%/Bio/Graphics/Wiggle -@dirrmtry %%SITE_PERL%%/Bio/Graphics/Glyph +man/man1/contig_draw.pl.1.gz +man/man1/feature_draw.pl.1.gz +man/man1/frend.pl.1.gz +man/man1/search_overview.pl.1.gz @dirrmtry %%SITE_PERL%%/Bio/Graphics/FeatureFile +@dirrmtry %%SITE_PERL%%/Bio/Graphics/Glyph +@dirrmtry %%SITE_PERL%%/Bio/Graphics/Wiggle @dirrmtry %%SITE_PERL%%/Bio/Graphics -@dirrmtry %%SITE_PERL%%/Bio @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Graphics -@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
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