Date: Thu, 14 Sep 2017 19:28:54 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_6 in build Message-ID: <201709141928.v8EJSsI4037066@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: h2+fbsdports@fsfe.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/biology/seqan-apps/Makefile 449591 2017-09-10 20:55:38Z gerald $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p449667_s323474/logs/seqan-apps-2.2.0_6.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p449667_s323474 Log: ====>> Building biology/seqan-apps build started at Thu Sep 14 18:52:50 UTC 2017 port directory: /usr/ports/biology/seqan-apps building for: FreeBSD head-armv6-default-job-22 12.0-CURRENT FreeBSD 12.0-CURRENT 1200044 arm maintained by: h2+fbsdports@fsfe.org Makefile ident: $FreeBSD: head/biology/seqan-apps/Makefile 449591 2017-09-10 20:55:38Z gerald $ Poudriere version: 3.1.19-63-g681eaae7 Host OSVERSION: 1200040 Jail OSVERSION: 1200044 Job Id: 22 !!! Jail is newer than host. (Jail: 1200044, Host: 1200040) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200044 UNAME_v=FreeBSD 12.0-CURRENT 1200044 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=seqan-apps-2.2.0_6 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-63-g681eaae7 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc6" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing" CPP="cpp6" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6" LIBS="" CXX="g++6" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -f no-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" RM_I386="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/seqan-apps" EXAMPLESDIR="share/examples/seqan-apps" DATADIR="share/seqan-apps" WWWDIR="www/seqan-apps" ETCDIR="etc/seqan-apps" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqan-apps DOCSDIR=/usr/local/share/doc/seqan-apps EXAMPLESDIR=/usr/local/share/examples/seqan-apps WWWDIR=/usr/local/www/seqan-apps ETCDIR=/usr/local/etc/seqan-apps --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=armv6 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=12.0 OSVERSION=1200044 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=12.0-CURRENT #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> seqan-apps-2.2.0_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [head-armv6-default-job-22] Installing pkg-1.10.1... [head-armv6-default-job-22] Extracting pkg-1.10.1: .......... done ===> seqan-apps-2.2.0_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqan-apps-2.2.0_6 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user ===> Fetching all distfiles required by seqan-apps-2.2.0_6 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user ===> Fetching all distfiles required by seqan-apps-2.2.0_6 for building => SHA256 Checksum OK for seqan-seqan-seqan-v2.2.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user ===> Fetching all distfiles required by seqan-apps-2.2.0_6 for building ===> Extracting for seqan-apps-2.2.0_6 => SHA256 Checksum OK for seqan-seqan-seqan-v2.2.0_GH0.tar.gz. <snip> [head-armv6-default-job-22] | `-- Extracting readline-7.0.3: .......... done [head-armv6-default-job-22] `-- Extracting python27-2.7.13_7: .......... done [head-armv6-default-job-22] Extracting ninja-1.7.2,2: ....... done Message from python27-2.7.13_7: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> seqan-apps-2.2.0_6 depends on executable: ninja - found ===> Returning to build of seqan-apps-2.2.0_6 ===> seqan-apps-2.2.0_6 depends on executable: gcc6 - not found ===> Installing existing package /packages/All/gcc6-6.4.0_1.txz [head-armv6-default-job-22] Installing gcc6-6.4.0_1... [head-armv6-default-job-22] `-- Installing binutils-2.28,1... [head-armv6-default-job-22] `-- Extracting binutils-2.28,1: .......... done [head-armv6-default-job-22] `-- Installing gmp-6.1.2... [head-armv6-default-job-22] `-- Extracting gmp-6.1.2: .......... done [head-armv6-default-job-22] `-- Installing mpc-1.0.3... [head-armv6-default-job-22] | `-- Installing mpfr-3.1.5_1... [head-armv6-default-job-22] | `-- Extracting mpfr-3.1.5_1: .......... done [head-armv6-default-job-22] `-- Extracting mpc-1.0.3: ...... done [head-armv6-default-job-22] Extracting gcc6-6.4.0_1: .......... done Message from gcc6-6.4.0_1: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> seqan-apps-2.2.0_6 depends on executable: gcc6 - found ===> Returning to build of seqan-apps-2.2.0_6 ===> seqan-apps-2.2.0_6 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for seqan-apps-2.2.0_6 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/seqan-apps/work/.build -- The CXX compiler identification is GNU 6.4.0 -- Check for working CXX compiler: /usr/local/bin/g++6 -- Check for working CXX compiler: /usr/local/bin/g++6 -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Selected repository dir: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring apps -- Configuring apps/alf -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Success -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Configuring apps/bs_tools -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Boost version: 1.64.0 -- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.13") -- Configuring apps/dfi -- Configuring apps/fiona -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Boost version: 1.64.0 -- Not building fiona on 32bit architectures. -- Configuring apps/fx_tools -- Configuring apps/gustaf -- Configuring apps/insegt -- Configuring apps/mason2 -- Configuring apps/micro_razers -- Configuring apps/ngs_roi -- Configuring apps/pair_align -- Configuring apps/param_chooser -- Configuring apps/rabema -- Configuring apps/razers -- Configuring apps/razers3 -- Found BZip2: /usr/lib/libbz2.so (found version "1.0.6") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Configuring apps/rep_sep -- Configuring apps/sak -- Configuring apps/sam2matrix -- Configuring apps/samcat -- Configuring apps/searchjoin -- Configuring apps/seqan_tcoffee -- Configuring apps/seqcons2 -- Configuring apps/sgip -- Configuring apps/snp_store -- Boost version: 1.64.0 -- Configuring apps/splazers -- Not building splazers on 32bit architectures. -- Configuring apps/stellar -- Configuring apps/tree_recon -- Configuring apps/yara -- Unsupported platform FreeBSD, disabling CTD support. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/biology/seqan-apps/work/.build =========================================================================== =======================<phase: build >============================ ===> Building for seqan-apps-2.2.0_6 [1/133] /usr/local/bin/g++6 -DSEQAN_APP_VERSION=\"0.3.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/sam2matrix/sam2matrix.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/sam2matrix/sam2matrix.cpp:41: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^~~~~~~ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [2/133] : && /usr/local/bin/g++6 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o bin/sam2matrix -lpthread -lexecinfo -lelf && : [3/133] /usr/local/bin/g++6 -DSEQAN_APP_VERSION=\"0.3.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o.d -o apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/samcat/samcat.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/samcat/samcat.cpp:35: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^~~~~~~ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [4/133] : && /usr/local/bin/g++6 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -o bin/samcat -lpthread -lexecinfo -lelf -lz && : [5/133] /usr/local/bin/g++6 -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -MF apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o.d -o apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/searchjoin/join.cpp FAILED: apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o /usr/local/bin/g++6 -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -MF apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o.d -o apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/searchjoin/join.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/searchjoin/join.cpp:59: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^~~~~~~ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] {standard input}: Assembler messages: {standard input}:6335: Error: bad instruction `rep' {standard input}:6352: Error: bad instruction `rep' {standard input}:6459: Error: bad instruction `rep' {standard input}:6476: Error: bad instruction `rep' {standard input}:6813: Error: bad instruction `rep' {standard input}:6830: Error: bad instruction `rep' {standard input}:6944: Error: bad instruction `rep' {standard input}:6961: Error: bad instruction `rep' {standard input}:7739: Error: bad instruction `rep' {standard input}:7756: Error: bad instruction `rep' {standard input}:7866: Error: bad instruction `rep' {standard input}:7883: Error: bad instruction `rep' {standard input}:8220: Error: bad instruction `rep' {standard input}:8237: Error: bad instruction `rep' {standard input}:8351: Error: bad instruction `rep' {standard input}:8368: Error: bad instruction `rep' {standard input}:9140: Error: bad instruction `rep' {standard input}:9157: Error: bad instruction `rep' {standard input}:9264: Error: bad instruction `rep' {standard input}:9281: Error: bad instruction `rep' {standard input}:9618: Error: bad instruction `rep' {standard input}:9635: Error: bad instruction `rep' {standard input}:9749: Error: bad instruction `rep' {standard input}:9766: Error: bad instruction `rep' {standard input}:10544: Error: bad instruction `rep' {standard input}:10561: Error: bad instruction `rep' {standard input}:10671: Error: bad instruction `rep' {standard input}:10688: Error: bad instruction `rep' {standard input}:11025: Error: bad instruction `rep' {standard input}:11042: Error: bad instruction `rep' {standard input}:11156: Error: bad instruction `rep' {standard input}:11173: Error: bad instruction `rep' {standard input}:29968: Error: bad instruction `rep' {standard input}:29984: Error: bad instruction `rep' {standard input}:30115: Error: bad instruction `rep' {standard input}:30131: Error: bad instruction `rep' {standard input}:30288: Error: bad instruction `rep' {standard input}:30304: Error: bad instruction `rep' {standard input}:30484: Error: bad instruction `rep' {standard input}:30500: Error: bad instruction `rep' ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqan-apps
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