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Date:      Tue, 16 Apr 2019 08:53:18 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120armv7-quarterly][science/py-h5py] Failed for py36-h5py-2.9.0_1 in build
Message-ID:  <201904160853.x3G8rIRL083015@beefy13.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Last committer: sunpoet@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q2/science/py-h5py/Makefile 489412 2019-01-05 22:46:53Z sunpoet $
Log URL:        http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/499069/logs/py36-h5py-2.9.0_1.log
Build URL:      http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=499069
Log:

=>> Building science/py-h5py
build started at Tue Apr 16 08:52:43 UTC 2019
port directory: /usr/ports/science/py-h5py
package name: py36-h5py-2.9.0_1
building for: FreeBSD 120armv7-quarterly-job-01 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm
maintained by: sunpoet@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q2/science/py-h5py/Makefile 489412 2019-01-05 22:46:53Z sunpoet $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300009
Jail OSVERSION: 1200086
Job Id: 01

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UNAME_r=12.0-RELEASE-p3
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POUDRIERE_VERSION=3.2.8-3-g02cc9753
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POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py36
DEPENDS_ARGS=
MAKE_ARGS= FLAVOR=py36
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for py36-h5py-2.9.0_1:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
sunpoet@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36  HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-h5py/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36  HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-h5py/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing "  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS=" " LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.6m  PYTHON_LIBDIR=lib/python3.6  PYTHON_PLATFORM=freebsd12  PYTHON_PYOEXTENSION=opt-1.pyc  PYTHON_SITELIBDIR=lib/python3.6/site-packages  PYTHON_SUFFIX=36  PYTHON_VER=3.6  PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py36-h5py"  EXAMPLESDIR="share/examples/py36-h5py"  DATADIR="share/py36-h5py"  WWWDIR="www/py36-h5py"  ETCDIR="etc/py36-h5py"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/py36-h5py DOCSDIR=/usr/local/share/doc/py36-h5py EXAMPLESDIR=/usr/local/share/examples/py36-h5py  WWWDIR=/usr/local/www/py36-h5py ETCDIR=/usr/local/etc/py36-h5py
--End SUB_LIST--

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PACKAGE_BUILDING_FLAVORS=yes
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ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
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# try the next mirror on checksum failure.  It currently retries the same
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MAKE_JOBS_NUMBER=2

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#### /usr/ports/Mk/Scripts/ports_env.sh ####
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OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
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SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
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---End make.nxb.conf---
--Resource limits--
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file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py36-h5py-2.9.0_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[120armv7-quarterly-job-01] Installing pkg-1.10.5_5...
[120armv7-quarterly-job-01] Extracting pkg-1.10.5_5: .......... done
===>   py36-h5py-2.9.0_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py36-h5py-2.9.0_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
=> h5py-2.9.0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://files.pythonhosted.org/packages/source/h/h5py/h5py-2.9.0.tar.gz
h5py-2.9.0.tar.gz                                      281 kB   14 MBps    00s
===> Fetching all distfiles required by py36-h5py-2.9.0_1 for building
===========================================================================
=======================<phase: checksum       >============================
<snip>
Message from gcc8-8.3.0_1:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_10:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from metis-5.1.0_7:

===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   py36-h5py-2.9.0_1 depends on package: py36-numpy>0 - found
===>   Returning to build of py36-h5py-2.9.0_1
===>   py36-h5py-2.9.0_1 depends on package: py36-six>=0 - not found
===>   Installing existing package /packages/All/py36-six-1.12.0.txz
[120armv7-quarterly-job-01] Installing py36-six-1.12.0...
[120armv7-quarterly-job-01] Extracting py36-six-1.12.0: .......... done
===>   py36-h5py-2.9.0_1 depends on package: py36-six>=0 - found
===>   Returning to build of py36-h5py-2.9.0_1
===>   py36-h5py-2.9.0_1 depends on package: py36-setuptools>0 - found
===>   py36-h5py-2.9.0_1 depends on file: /usr/local/bin/python3.6 - found
===>   py36-h5py-2.9.0_1 depends on executable: cython-3.6 - not found
===>   Installing existing package /packages/All/py36-cython-0.29.txz
[120armv7-quarterly-job-01] Installing py36-cython-0.29...
[120armv7-quarterly-job-01] Extracting py36-cython-0.29: .......... done
===>   py36-h5py-2.9.0_1 depends on executable: cython-3.6 - found
===>   Returning to build of py36-h5py-2.9.0_1
===>   py36-h5py-2.9.0_1 depends on package: py36-setuptools>0 - found
===>   py36-h5py-2.9.0_1 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   py36-h5py-2.9.0_1 depends on shared library: libhdf5.so - not found
===>   Installing existing package /packages/All/hdf5-1.10.4.txz
[120armv7-quarterly-job-01] Installing hdf5-1.10.4...
[120armv7-quarterly-job-01] `-- Installing hdf-szip-2.1.1...
[120armv7-quarterly-job-01] `-- Extracting hdf-szip-2.1.1: .......... done
[120armv7-quarterly-job-01] Extracting hdf5-1.10.4: .......... done
===>   py36-h5py-2.9.0_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===>   Returning to build of py36-h5py-2.9.0_1
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py36-h5py-2.9.0_1
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py36-h5py-2.9.0_1
running build
running build_py
creating build
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/ipy_completer.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/version.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/highlevel.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/h5py_warnings.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/group.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/files.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/compat.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/dataset.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/base.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/datatype.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/selections.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/filters.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/vds.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/selections2.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/dims.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/attrs.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests
copying h5py/tests/common.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests
copying h5py/tests/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_file.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5f.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_base.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_attrs.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_group.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_file_image.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_objects.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5t.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5d_direct_chunk_write.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_dataset.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_datatype.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_attrs_data.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_dimension_scales.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5p.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_slicing.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_selections.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_threads.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_file.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_dims_dimensionproxy.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_filters.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_dataset_getitem.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_dataset_swmr.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_deprecation.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_attribute_create.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_datatype.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl/test_vds
copying h5py/tests/hl/test_vds/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl/test_vds
copying h5py/tests/hl/test_vds/test_virtual_source.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl/test_vds
copying h5py/tests/hl/test_vds/test_highlevel_vds.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl/test_vds
copying h5py/tests/hl/test_vds/test_lowlevel_vds.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl/test_vds
running build_ext
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
    from . import multiarray
  File "/usr/local/lib/python3.6/site-packages/numpy/core/multiarray.py", line 12, in <module>
    from . import overrides
  File "/usr/local/lib/python3.6/site-packages/numpy/core/overrides.py", line 6, in <module>
    from numpy.core._multiarray_umath import (
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 168, in <module>
    cmdclass = CMDCLASS,
  File "/usr/local/lib/python3.6/site-packages/setuptools/__init__.py", line 145, in setup
    return distutils.core.setup(**attrs)
  File "/usr/local/lib/python3.6/distutils/core.py", line 148, in setup
    dist.run_commands()
  File "/usr/local/lib/python3.6/distutils/dist.py", line 955, in run_commands
    self.run_command(cmd)
  File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "/usr/local/lib/python3.6/distutils/command/build.py", line 135, in run
    self.run_command(cmd_name)
  File "/usr/local/lib/python3.6/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "/wrkdirs/usr/ports/science/py-h5py/work-py36/h5py-2.9.0/setup_build.py", line 157, in run
    import numpy
  File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
    from . import core
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 47, in <module>
    raise ImportError(msg)
ImportError: 

IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
Here is how to proceed:
- If you're working with a numpy git repository, try `git clean -xdf`
  (removes all files not under version control) and rebuild numpy.
- If you are simply trying to use the numpy version that you have installed:
  your installation is broken - please reinstall numpy.
- If you have already reinstalled and that did not fix the problem, then:
  1. Check that you are using the Python you expect (you're using /usr/local/bin/python3.6),
     and that you have no directories in your PATH or PYTHONPATH that can
     interfere with the Python and numpy versions you're trying to use.
  2. If (1) looks fine, you can open a new issue at
     https://github.com/numpy/numpy/issues.  Please include details on:
     - how you installed Python
     - how you installed numpy
     - your operating system
     - whether or not you have multiple versions of Python installed
     - if you built from source, your compiler versions and ideally a build log

     Note: this error has many possible causes, so please don't comment on
     an existing issue about this - open a new one instead.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-h5py



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