Date: Thu, 12 Aug 2021 04:20:42 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - main-arm64-default][biology/exonerate] Failed for exonerate-2.4.0 in build Message-ID: <202108120420.17C4KgOB084261@ampere2.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mzaki@niid.go.jp Log URL: http://ampere2.nyi.freebsd.org/data/main-arm64-default/p507d4271e0bb_s5ae48eb998/logs/exonerate-2.4.0.log Build URL: http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=p507d4271e0bb_s5ae48eb998 Log: =>> Building biology/exonerate build started at Thu Aug 12 04:10:24 UTC 2021 port directory: /usr/ports/biology/exonerate package name: exonerate-2.4.0 building for: FreeBSD main-arm64-default-job-07 14.0-CURRENT FreeBSD 14.0-CURRENT 1400029 arm64 maintained by: mzaki@niid.go.jp Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400008 Jail OSVERSION: 1400029 Job Id: 07 !!! Jail is newer than host. (Jail: 1400029, Host: 1400008) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1400029 UNAME_v=FreeBSD 14.0-CURRENT 1400029 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-arm64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-arm64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- mzaki@niid.go.jp --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/exonerate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/exonerate/work HOME=/wrkdirs/usr/ports/biology/exonerate/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/exonerate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/exonerate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/exonerate/work HOME=/wrkdirs/usr/ports/biology/exonerate/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/exonerate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/exonerate" EXAMPLESDIR="share/examples/exonerate" DATADIR="share/exonerate" WWWDIR="www/exonerate" ETCDIR="etc/exonerate" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/exonerate DOCSDIR=/usr/local/share/doc/exonerate EXAMPLESDIR=/usr/local/share/examples/exonerate WWWDIR=/usr/local/www/exonerate ETCDIR=/usr/local/etc/exonerate --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400029 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> exonerate-2.4.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.1.pkg [main-arm64-default-job-07] Installing pkg-1.17.1... [main-arm64-default-job-07] Extracting pkg-1.17.1: .......... done ===> exonerate-2.4.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of exonerate-2.4.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by exonerate-2.4.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by exonerate-2.4.0 for building => SHA256 Checksum OK for exonerate-2.4.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by exonerate-2.4.0 for building ===> Extracting for exonerate-2.4.0 => SHA256 Checksum OK for exonerate-2.4.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for exonerate-2.4.0 =========================================================================== =======================<phase: build-depends >============================ ===> exonerate-2.4.0 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.7.4,1.pkg [main-arm64-default-job-07] Installing pkgconf-1.7.4,1... [main-arm64-default-job-07] Extracting pkgconf-1.7.4,1: .......... done ===> exonerate-2.4.0 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of exonerate-2.4.0 =========================================================================== =======================<phase: lib-depends >============================ ===> exonerate-2.4.0 depends on shared library: libglib-2.0.so - not found ===> Installing existing package /packages/All/glib-2.68.3,2.pkg <snip> ** Message: 04:17:19.388: Processing model [c2c] ** Message: 04:17:19.389: Bootstrapper processing model [coding2coding] ** Message: 04:17:19.389: Process optimal [optimal:coding2coding] ** Message: 04:17:19.393: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_score.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen /aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_score.c ** Message: 04:17:20.858: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/ aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path.c ** Message: 04:17:22.652: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_region.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codege n/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_region.c ** Message: 04:17:24.897: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_checkpoint.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/co degen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_checkpoint.c ** Message: 04:17:29.754: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerat e-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.c ** Message: 04:17:34.454: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_score.o] ** Message: 04:17:34.454: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_score.o ** Message: 04:17:34.472: Adding function [optimal_58_coding2coding_32_find_32_score] ** Message: 04:17:34.472: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path.o] ** Message: 04:17:34.472: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path.o ** Message: 04:17:34.491: Adding function [optimal_58_coding2coding_32_find_32_path] ** Message: 04:17:34.491: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_region.o] ** Message: 04:17:34.491: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_region.o ** Message: 04:17:34.509: Adding function [optimal_58_coding2coding_32_find_32_region] ** Message: 04:17:34.509: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_checkpoint.o] ** Message: 04:17:34.509: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_checkpoint.o ** Message: 04:17:34.531: Adding function [optimal_58_coding2coding_32_find_32_checkpoint] ** Message: 04:17:34.531: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.o] ** Message: 04:17:34.531: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2coding_32_find_32_path_32_continuation.o ** Message: 04:17:34.550: Adding function [optimal_58_coding2coding_32_find_32_path_32_continuation] ** Message: 04:17:34.593: Process optimal [Terminal [Segment("START"->"match"):[coding2coding]]] ** Message: 04:17:34.603: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score. o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: 04:17:38.670: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: 04:17:43.607: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: 04:17:43.607: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: 04:17:43.627: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: 04:17:43.627: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: 04:17:43.627: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: 04:17:43.646: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: 04:17:43.647: Process optimal [Terminal [Segment("match"->"END"):[coding2coding]]] ** Message: 04:17:43.652: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: 04:17:45.756: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o - c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: 04:17:48.234: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: 04:17:48.234: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: 04:17:48.255: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: 04:17:48.255: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: 04:17:48.255: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: 04:17:48.275: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: 04:17:48.275: Process optimal [HeuristicJoin:[Segment("match"->"match"):[coding2coding]]] ** Message: 04:17:48.291: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_s core.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: 04:17:54.556: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_p ath.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: 04:18:02.386: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: 04:18:02.386: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: 04:18:02.407: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: 04:18:02.407: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: 04:18:02.407: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: 04:18:02.428: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: 04:18:02.430: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o -c /wrkdirs/usr/ports/biology/exonerate /work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.c ** Message: 04:18:02.970: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o -c /wrkdirs/usr/ports/biology/exonerate /work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.c ** Message: 04:18:03.655: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] ** Message: 04:18:03.656: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o ** Message: 04:18:03.678: Adding function [Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded] ** Message: 04:18:03.678: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] ** Message: 04:18:03.678: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o ** Message: 04:18:03.698: Adding function [Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded] ** Message: 04:18:03.699: Processing model [c2g] ** Message: 04:18:03.700: Bootstrapper processing model [coding2genome] ** Message: 04:18:03.700: Process optimal [optimal:coding2genome] ** Message: 04:18:03.707: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_score.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen /aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_score.c ** Message: 04:18:06.833: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/ aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path.c ** Message: 04:18:11.190: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_region.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codege n/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_region.c ** Message: 04:18:14.780: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_checkpoint.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/co degen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_checkpoint.c ** Message: 04:18:25.742: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerat e-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.c ** Message: 04:18:37.432: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_score.o] ** Message: 04:18:37.432: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_score.o ** Message: 04:18:37.456: Adding function [optimal_58_coding2genome_32_find_32_score] ** Message: 04:18:37.456: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path.o] ** Message: 04:18:37.456: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path.o ** Message: 04:18:37.476: Adding function [optimal_58_coding2genome_32_find_32_path] ** Message: 04:18:37.476: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_region.o] ** Message: 04:18:37.476: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_region.o ** Message: 04:18:37.497: Adding function [optimal_58_coding2genome_32_find_32_region] ** Message: 04:18:37.497: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_checkpoint.o] ** Message: 04:18:37.497: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_checkpoint.o ** Message: 04:18:37.517: Adding function [optimal_58_coding2genome_32_find_32_checkpoint] ** Message: 04:18:37.517: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.o] ** Message: 04:18:37.517: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_coding2genome_32_find_32_path_32_continuation.o ** Message: 04:18:37.539: Adding function [optimal_58_coding2genome_32_find_32_path_32_continuation] ** Message: 04:18:37.541: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o -c /wrkdirs/usr/ports/biology/exone rate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c ** Message: 04:18:38.243: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o -c /wrkdirs/usr/ports/biology/exonera te/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.c ** Message: 04:18:39.053: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: 04:18:39.054: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o ** Message: 04:18:39.077: Adding function [Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary] ** Message: 04:18:39.077: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] ** Message: 04:18:39.077: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o ** Message: 04:18:39.099: Adding function [Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary] ** Message: 04:18:39.099: Processing model [cd2g] ** Message: 04:18:39.104: Bootstrapper processing model [cdna2genome] ** Message: 04:18:39.104: Process optimal [optimal:cdna2genome] ** Message: 04:18:39.118: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_score.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/a arch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_score.c ** Message: 04:18:46.275: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aa rch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path.c ** Message: 04:18:54.803: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_region.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/ aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_region.c ** Message: 04:19:02.970: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/code gen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.c ** Message: 04:19:24.208: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.o -c /wrkdirs/usr/ports/biology/exonerate/work/exonerate- 2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.c ** Message: 04:19:47.587: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_score.o] ** Message: 04:19:47.587: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_score.o ** Message: 04:19:47.608: Adding function [optimal_58_cdna2genome_32_find_32_score] ** Message: 04:19:47.608: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path.o] ** Message: 04:19:47.609: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path.o ** Message: 04:19:47.631: Adding function [optimal_58_cdna2genome_32_find_32_path] ** Message: 04:19:47.631: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_region.o] ** Message: 04:19:47.631: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_region.o ** Message: 04:19:47.654: Adding function [optimal_58_cdna2genome_32_find_32_region] ** Message: 04:19:47.654: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.o] ** Message: 04:19:47.655: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_checkpoint.o ** Message: 04:19:47.677: Adding function [optimal_58_cdna2genome_32_find_32_checkpoint] ** Message: 04:19:47.677: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] ** Message: 04:19:47.677: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/optimal_58_cdna2genome_32_find_32_path_32_continuation.o ** Message: 04:19:47.701: Adding function [optimal_58_cdna2genome_32_find_32_path_32_continuation] ** Message: 04:19:47.703: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o -c /wrkdirs/usr/ports/biology/exonera te/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c ** Message: 04:19:48.801: Compiling codegen: cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/model -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/comparison -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/bsdp -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sdp -o /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o -c /wrkdirs/usr/ports/biology/exonerate /work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.c ** Message: 04:19:50.109: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: 04:19:50.109: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o ** Message: 04:19:50.133: Adding function [Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary] ** Message: 04:19:50.133: Adding: [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] ** Message: 04:19:50.133: Adding object file [/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/codegen/aarch64_45_portbld_45_freebsd14_46_0/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o ** Message: 04:19:50.156: Adding function [Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary] ** Message: 04:19:50.157: Compiling with: [cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/c4 -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/sequence -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/general -I/wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/struct -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -o c4_model_lookup.o -c c4_model_lookup.c] ** Message: 04:19:50.686: Adding: [c4_model_lookup.o] ** Message: 04:19:50.686: Adding object file [c4_model_lookup.o] to archive ar -Sq c4_model_archive.a c4_model_lookup.o ** Message: 04:19:50.711: Indexing archive [c4_model_archive.a] ranlib c4_model_archive.a Assertion failed: (mode == 'p' || mode == 't' || mode == 'x'), function ar_read_archive, file /usr/local/poudriere/jails/main-arm64/usr/src/usr.bin/ar/read.c, line 68. ** Message: 04:19:50.721: Done ** FATAL ERROR **: Problem indexing archive [134][ranlib c4_model_archive.a] exiting ... *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src/program *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0/src *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/exonerate/work/exonerate-2.4.0 *** Error code 1 Stop. make: stopped in /usr/ports/biology/exonerate
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