Skip site navigation (1)Skip section navigation (2)
Date:      Thu, 22 Aug 2019 20:43:26 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-powerpc64-default][biology/cufflinks] Failed for cufflinks-2.2.1.83 in configure
Message-ID:  <201908222043.x7MKhQSm011841@pylon.nyi.freebsd.org>

next in thread | raw e-mail | index | archive | help

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: yuri@FreeBSD.org
Ident:          $FreeBSD: head/biology/cufflinks/Makefile 502661 2019-05-25 22:28:12Z yuri $
Log URL:        http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p509021_s351093/logs/cufflinks-2.2.1.83.log
Build URL:      http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p509021_s351093
Log:

=>> Building biology/cufflinks
build started at Thu Aug 22 20:41:24 UTC 2019
port directory: /usr/ports/biology/cufflinks
package name: cufflinks-2.2.1.83
building for: FreeBSD head-powerpc64-default-job-08 13.0-CURRENT FreeBSD 13.0-CURRENT 1300039 powerpc
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/cufflinks/Makefile 502661 2019-05-25 22:28:12Z yuri $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300039
Jail OSVERSION: 1300039
Job Id: 08

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300039
UNAME_v=FreeBSD 13.0-CURRENT 1300039
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=screen
PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-powerpc64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cufflinks/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cufflinks/work  HOME=/wrkdirs/usr/ports/biology/cufflinks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cufflinks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cufflinks/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cufflinks/work  HOME=/wrkdirs/usr/ports/biology/cufflinks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cufflinks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -I/usr/local/include/eigen3 -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include/eigen3 -fstack-protector-strong -fno-strict-aliasing  -I/usr/local/include/eigen3 "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.6m  PYTHON_LIBDIR=lib/python3.6  PYTHON_PLATFORM=freebsd13  PYTHON_SITELIBDIR=lib/python3.6/site-packages  PYTHON_SUFFIX=36  PYTHON_VER=3.6  PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cufflinks"  EXAMPLESDIR="share/examples/cufflinks"  DATADIR="share/cufflinks"  WWWDIR="www/cufflinks"  ETCDIR="etc/cufflinks"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/cufflinks DOCSDIR=/usr/local/share/doc/cufflinks EXAMPLESDIR=/usr/local/share/examples/cufflinks  WWWDIR=/usr/local/www/cufflinks ETCDIR=/usr/local/etc/cufflinks
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300039
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSL accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   cufflinks-2.2.1.83 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.11.1.txz
[head-powerpc64-default-job-08] Installing pkg-1.11.1...
[head-powerpc64-default-job-08] Extracting pkg-1.11.1: .......... done
===>   cufflinks-2.2.1.83 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of cufflinks-2.2.1.83
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSL accepted by the user
===> Fetching all distfiles required by cufflinks-2.2.1.83 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSL accepted by the user
===> Fetching all distfiles required by cufflinks-2.2.1.83 for building
=> SHA256 Checksum OK for cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSL accepted by the user
===> Fetching all distfiles required by cufflinks-2.2.1.83 for building
===>  Extracting for cufflinks-2.2.1.83
=> SHA256 Checksum OK for cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for cufflinks-2.2.1.83
===>  Applying FreeBSD patches for cufflinks-2.2.1.83
===========================================================================
=======================<phase: build-depends  >============================
===>   cufflinks-2.2.1.83 depends on package: autoconf>=2.69 - not found
===>   Installing existing package /packages/All/autoconf-2.69_3.txz
[head-powerpc64-default-job-08] Installing autoconf-2.69_3...
[head-powerpc64-default-job-08] `-- Installing autoconf-wrapper-20131203...
[head-powerpc64-default-job-08] `-- Extracting autoconf-wrapper-20131203: .......... done
[head-powerpc64-default-job-08] `-- Installing indexinfo-0.3.1...
[head-powerpc64-default-job-08] `-- Extracting indexinfo-0.3.1: .... done
[head-powerpc64-default-job-08] `-- Installing m4-1.4.18_1,1...
[head-powerpc64-default-job-08] `-- Extracting m4-1.4.18_1,1: .......... done
[head-powerpc64-default-job-08] `-- Installing perl5-5.30.0...
[head-powerpc64-default-job-08] `-- Extracting perl5-5.30.0: .......... done
[head-powerpc64-default-job-08] Extracting autoconf-2.69_3: .......... done
Message from perl5-5.30.0:

<snip>
./../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
./../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
./../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_serialization.m4:33: AX_BOOST_SERIALIZATION is expanded from...
configure.ac:40: the top level
configure.ac:42: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
./../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
./../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
./../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
./../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
./../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
./../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_thread.m4:33: AX_BOOST_THREAD is expanded from...
configure.ac:42: the top level
configure.ac:35: installing 'build-aux/ar-lib'
configure.ac:31: installing 'build-aux/compile'
configure.ac:39: installing 'build-aux/config.guess'
configure.ac:39: installing 'build-aux/config.sub'
configure.ac:16: installing 'build-aux/install-sh'
configure.ac:16: installing 'build-aux/missing'
src/Makefile.am:113: warning: source file 'locfit/adap.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled.  For now, the corresponding output
automake: object file(s) will be placed in the top-level directory.  However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am:113: warning: source file 'locfit/ar_funs.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/arith.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/band.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/c_args.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/c_plot.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/cmd.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/dens_haz.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/dens_int.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/dens_odi.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/density.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/dist.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_atree.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_interp.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_kdtre.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_main.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_trian.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/family.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/fitted.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/frend.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/help.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lf_dercor.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lf_fitfun.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lf_robust.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lf_vari.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lfd.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lfstr.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/linalg.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/locfit.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/m_chol.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/m_eigen.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/m_jacob.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/m_max.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/makecmd.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/math.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/minmax.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/nbhd.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/pcomp.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/pout.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/preplot.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/random.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/readfile.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/scb.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/scb_cons.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/simul.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/solve.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/startlf.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/strings.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/vari.cpp' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/wdiag.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/weight.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am: installing 'build-aux/depcomp'
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking whether gmake supports nested variables... yes
checking for gawk... (cached) /usr/bin/awk
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking whether gmake supports the include directive... yes (GNU style)
checking dependency style of c++... gcc3
checking for gcc... cc
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking dependency style of cc... gcc3
checking whether gmake sets $(MAKE)... (cached) yes
checking for ranlib... ranlib
checking for ar... ar
checking the archiver (ar) interface... ar
checking whether /usr/local/bin/python3.6 version is >= 2.4... yes
checking for /usr/local/bin/python3.6 version... 3.6
checking for /usr/local/bin/python3.6 platform... freebsd13
checking for /usr/local/bin/python3.6 script directory... ${prefix}/lib/python3.6/site-packages
checking for /usr/local/bin/python3.6 extension module directory... ${exec_prefix}/lib/python3.6/site-packages
checking for boostlib >= 1.47.0... yes
checking for htslib or bamlib... yes
checking build system type... powerpc64-portbld-freebsd13.0
checking whether the Boost::System library is available... yes
checking for exit in -lboost_system... yes
checking for exit in -lboost_system... (cached) yes
checking whether the Boost::Serialization library is available... yes
checking for exit in -lboost_serialization... no
checking for exit in -lboost_serialization... (cached) no
checking for exit in -lboost_serialization... (cached) no
checking for exit in -lboost_serialization... (cached) no
checking for exit in -lboost_serialization... (cached) no
checking for exit in -llibboost_serialization.a... no
checking for exit in -lboost_serialization... (cached) no
checking for exit in -lboost_serialization... (cached) no
checking for exit in -lboost_serialization... (cached) no
checking for exit in -lboost_serialization... (cached) no
checking for exit in -lboost_serialization... (cached) no
checking for exit in -llibboost_serialization.a... (cached) no
checking whether the Boost::Filesystem library is available... yes
checking for exit in -lboost_filesystem... no
checking for exit in -lboost_filesystem... (cached) no
checking for exit in -lboost_filesystem... (cached) no
checking for exit in -lboost_filesystem... (cached) no
checking for exit in -lboost_filesystem... (cached) no
configure: error: Could not link against boost_filesystem !
===>  Script "configure" failed unexpectedly.
Please report the problem to yuri@FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050/config.log"
including the output of the failure of your make command. Also, it might be
a good idea to provide an overview of all packages installed on your system
(e.g. a /usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/cufflinks



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201908222043.x7MKhQSm011841>