Date: Tue, 22 May 2007 12:25:09 -0500 (CDT) From: Jason Bacon <bacon@smithers.neuro.mcw.edu> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/112868: [maintainer update] science/afni Message-ID: <200705221725.l4MHP94e057345@smithers.neuro.mcw.edu> Resent-Message-ID: <200705221730.l4MHU5hH052596@freefall.freebsd.org>
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>Number: 112868 >Category: ports >Synopsis: [maintainer update] science/afni >Confidential: no >Severity: critical >Priority: medium >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Tue May 22 17:30:05 GMT 2007 >Closed-Date: >Last-Modified: >Originator: Jason Bacon >Release: FreeBSD 5.4-RELEASE i386 >Organization: Medical College of Wisconsin >Environment: System: FreeBSD smithers.neuro.mcw.edu 5.4-RELEASE FreeBSD 5.4-RELEASE #2: Wed Aug 24 14:54:53 CDT 2005 bacon@clone.neuro.mcw.edu:/usr/obj/usr/src/sys/clone i386 >Description: AFNI port fails to build since the X11 merge. Adding libGLU to LIB_DEPENDS should correct the problem. This update also includes a few minor, unrelated updates. >How-To-Repeat: >Fix: diff -ruN afni/Makefile afni-latest/Makefile --- afni/Makefile Sat May 19 15:22:01 2007 +++ afni-latest/Makefile Tue May 22 12:21:00 2007 @@ -3,7 +3,7 @@ # Date created: 11 Jan 2005 # Whom: bacon@smithers.neuro.mcw.edu # -# $FreeBSD: ports/science/afni/Makefile,v 1.11 2007/05/19 20:22:01 flz Exp $ +# $FreeBSD$ # ############################################################################ @@ -17,7 +17,7 @@ PORTNAME= afni PORTVERSION= 2007.04.18.1830 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science biology graphics MASTER_SITES= http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/ \ http://afni.nimh.nih.gov/pub/dist/tgz/ @@ -34,6 +34,7 @@ whirlgif:${PORTSDIR}/graphics/whirlgif \ ppmtogif:${PORTSDIR}/graphics/netpbm \ endian:${PORTSDIR}/sysutils/endian +LIB_DEPENDS= GLU.1:${PORTSDIR}/graphics/libGLU .include <bsd.port.pre.mk> @@ -88,10 +89,6 @@ ${STAGE}/doc \ ${STAGE}/share ${MV} ${INSTALL_WRKSRC}/libf2c.a \ - ${INSTALL_WRKSRC}/cjpeg \ - ${INSTALL_WRKSRC}/djpeg \ - ${INSTALL_WRKSRC}/mpeg_encode \ - ${INSTALL_WRKSRC}/whirlgif \ ${STAGE}/trash ${MV} ${INSTALL_WRKSRC}/*.a \ ${INSTALL_WRKSRC}/*.so \ @@ -104,6 +101,7 @@ ${STAGE}/include ${MV} ${INSTALL_WRKSRC}/README* \ ${STAGE}/doc + ${MV} ${INSTALL_WRKSRC}/abut ${INSTALL_WRKSRC}/afni_abut for binary in `${FILE} ${INSTALL_WRKSRC}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \ ${MV} $${binary} ${STAGE}/bin ; \ done diff -ruN afni/files/patch-Makefile.INCLUDE afni-latest/files/patch-Makefile.INCLUDE --- afni/files/patch-Makefile.INCLUDE Wed Dec 31 18:00:00 1969 +++ afni-latest/files/patch-Makefile.INCLUDE Fri Apr 27 15:03:56 2007 @@ -0,0 +1,11 @@ +--- Makefile.INCLUDE.orig Fri Apr 27 15:03:08 2007 ++++ Makefile.INCLUDE Fri Apr 27 15:03:29 2007 +@@ -41,7 +41,7 @@ + ## AFNI package, but included because they are useful. Some of + ## them are Open Source programs, not from the AFNI group at all. + +-EXTRAS = cjpeg djpeg whirlgif mpeg_encode myget Xphace rmz aiv $(EXPROGS) ++EXTRAS = myget Xphace rmz aiv $(EXPROGS) + + # mpegtoppm in above list + diff -ruN afni/pkg-message afni-latest/pkg-message --- afni/pkg-message Sat Apr 21 08:37:39 2007 +++ afni-latest/pkg-message Tue Apr 24 14:32:11 2007 @@ -14,4 +14,7 @@ memory limit on your system. For instructions, visit http://www.neuro.mcw.edu/~bacon/FreeBSD_MRI/ + +The prorgam "abut" has been renamed "afni_abut" to resolve a collision +with the unixstat port. ============================================================================= diff -ruN afni/pkg-plist afni-latest/pkg-plist --- afni/pkg-plist Sat Apr 21 08:37:39 2007 +++ afni-latest/pkg-plist Tue Apr 24 14:53:31 2007 @@ -209,9 +209,9 @@ bin/SurfaceMetrics bin/Vecwarp bin/Xphace -bin/abut bin/adwarp bin/afni +bin/afni_abut bin/afni_base.py bin/afni_proc.py bin/afni_util.py >Release-Note: >Audit-Trail: >Unformatted:
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