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Date:      Thu, 9 Nov 2017 02:35:31 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 110armv6-quarterly][biology/phyml] Failed for phyml-3.3.20170530, 1 in build
Message-ID:  <201711090235.vA92ZVAo010728@beefy15.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports@FreeBSD.org
Last committer: sunpoet@FreeBSD.org
Ident:          $FreeBSD: branches/2017Q4/biology/phyml/Makefile 449234 2017-09-04 00:01:36Z sunpoet $
Log URL:        http://beefy15.nyi.freebsd.org/data/110armv6-quarterly/453786/logs/phyml-3.3.20170530,1.log
Build URL:      http://beefy15.nyi.freebsd.org/build.html?mastername=110armv6-quarterly&build=453786
Log:

====>> Building biology/phyml
build started at Thu Nov  9 02:34:33 UTC 2017
port directory: /usr/ports/biology/phyml
building for: FreeBSD 110armv6-quarterly-job-05 11.0-RELEASE-p14 FreeBSD 11.0-RELEASE-p14 1100122 arm
maintained by: ports@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2017Q4/biology/phyml/Makefile 449234 2017-09-04 00:01:36Z sunpoet $
Poudriere version: 3.1.22
Host OSVERSION: 1200050
Jail OSVERSION: 1100122
Job Id: 05

---Begin Environment---
POUDRIEREPATH=/usr/local/bin/poudriere
LOCALBASE=/usr/local
LIBEXECPREFIX=/usr/local/libexec/poudriere
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIERE_VERSION=3.1.22
HOME=/root
USER=root
SCRIPTPREFIX=/usr/local/share/poudriere
MASTERNAME=110armv6-quarterly
PWD=/usr/local/poudriere/data/.m/110armv6-quarterly/ref/.p/pool
OLDPWD=/
PKGNAME=phyml-3.3.20170530,1
POUDRIERE_BUILD_TYPE=bulk
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/110armv6-quarterly/ref
SAVED_TERM=
STATUS=1
MAIL=/var/mail/root
BLOCKSIZE=K
UNAME_r=11.0-RELEASE-p14
UNAME_v=FreeBSD 11.0-RELEASE-p14 1100122
OSVERSION=1100122
ABI_FILE=/usr/lib/crt1.o
UNAME_m=arm
UNAME_p=armv6
SHELL=/bin/csh
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for phyml-3.3.20170530,1:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
====> MPI (Message Passing Interface) support: you can only select none or one of them
     MPICH2=off: Parallel processing support via MPICH2
     OPENMPI=off: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--disable-beagle --disable-mpi --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work  HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work  HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/phyml"
EXAMPLESDIR="share/examples/phyml"
DATADIR="share/phyml"
WWWDIR="www/phyml"
ETCDIR="etc/phyml"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/phyml
DOCSDIR=/usr/local/share/doc/phyml
EXAMPLESDIR=/usr/local/share/examples/phyml
WWWDIR=/usr/local/www/phyml
ETCDIR=/usr/local/etc/phyml
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=armv6
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun
_JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+
_OSRELEASE=11.0-RELEASE-p14
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>   NOTICE:

The phyml port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   phyml-3.3.20170530,1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.1.txz
[110armv6-quarterly-job-05] Installing pkg-1.10.1...
[110armv6-quarterly-job-05] Extracting pkg-1.10.1: .......... done
===>   phyml-3.3.20170530,1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of phyml-3.3.20170530,1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>   NOTICE:

The phyml port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by phyml-3.3.20170530,1 for building
===========================================================================
=======================<phase: checksum       >============================
===>   NOTICE:

The phyml port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by phyml-3.3.20170530,1 for building
=> SHA256 Checksum OK for stephaneguindon-phyml-v3.3.20170530_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>   NOTICE:

The phyml port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by phyml-3.3.20170530,1 for building
===>  Extracting for phyml-3.3.20170530,1
=> SHA256 Checksum OK for stephaneguindon-phyml-v3.3.20170530_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for phyml-3.3.20170530,1
===========================================================================
=======================<phase: build-depends  >============================
===>   phyml-3.3.20170530,1 depends on executable: autoconf-2.69 - not found
===>   Installing existing package /packages/All/autoconf-2.69_1.txz
[110armv6-quarterly-job-05] Installing autoconf-2.69_1...
[110armv6-quarterly-job-05] `-- Installing autoconf-wrapper-20131203...
[110armv6-quarterly-job-05] `-- Extracting autoconf-wrapper-20131203: ........ done
[110armv6-quarterly-job-05] `-- Installing indexinfo-0.2.6...
[110armv6-quarterly-job-05] `-- Extracting indexinfo-0.2.6: .... done
[110armv6-quarterly-job-05] `-- Installing m4-1.4.18,1...
[110armv6-quarterly-job-05] `-- Extracting m4-1.4.18,1: .......... done
[110armv6-quarterly-job-05] `-- Installing perl5-5.24.3...
[110armv6-quarterly-job-05] `-- Extracting perl5-5.24.3: .......... done
[110armv6-quarterly-job-05] Extracting autoconf-2.69_1: .......... done
Message from perl5-5.24.3:
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:

#!/usr/local/bin/perl

or

#!/usr/bin/env perl

The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===>   phyml-3.3.20170530,1 depends on executable: autoconf-2.69 - found
===>   Returning to build of phyml-3.3.20170530,1
===>   phyml-3.3.20170530,1 depends on executable: autoheader-2.69 - found
===>   phyml-3.3.20170530,1 depends on executable: autoreconf-2.69 - found
===>   phyml-3.3.20170530,1 depends on executable: aclocal-1.15 - not found
===>   Installing existing package /packages/All/automake-1.15.1.txz
[110armv6-quarterly-job-05] Installing automake-1.15.1...
[110armv6-quarterly-job-05] `-- Installing automake-wrapper-20131203...
[110armv6-quarterly-job-05] `-- Extracting automake-wrapper-20131203: ... done
[110armv6-quarterly-job-05] Extracting automake-1.15.1: .......... done
===>   phyml-3.3.20170530,1 depends on executable: aclocal-1.15 - found
===>   Returning to build of phyml-3.3.20170530,1
===>   phyml-3.3.20170530,1 depends on executable: automake-1.15 - found
===>   phyml-3.3.20170530,1 depends on executable: libtoolize - not found
===>   Installing existing package /packages/All/libtool-2.4.6.txz
[110armv6-quarterly-job-05] Installing libtool-2.4.6...
[110armv6-quarterly-job-05] Extracting libtool-2.4.6: .......... done
===>   phyml-3.3.20170530,1 depends on executable: libtoolize - found
===>   Returning to build of phyml-3.3.20170530,1
===>   phyml-3.3.20170530,1 depends on package: pkgconf>=1.3.0_1 - not found
===>   Installing existing package /packages/All/pkgconf-1.3.7,1.txz
[110armv6-quarterly-job-05] Installing pkgconf-1.3.7,1...
[110armv6-quarterly-job-05] Extracting pkgconf-1.3.7,1: .......... done
===>   phyml-3.3.20170530,1 depends on package: pkgconf>=1.3.0_1 - found
===>   Returning to build of phyml-3.3.20170530,1
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for phyml-3.3.20170530,1
aclocal-1.15: warning: couldn't open directory 'm4': No such file or directory
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking build system type... armv6-portbld-freebsd11.0
checking host system type... armv6-portbld-freebsd11.0
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed
checking whether /nxb-bin/usr/bin/cc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of /nxb-bin/usr/bin/cc... gcc3
checking dependency style of /nxb-bin/usr/bin/cc... (cached) gcc3
checking for log in -lm... yes
checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for float.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... (cached) yes
checking for pdflatex... no
checking for latex... no
configure: WARNING: Documentation will not be built!
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... (cached) yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for vprintf... (cached) yes
checking for _doprnt... no
checking for floor... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking for strchr... yes
checking for strstr... yes
checking pkg-config is at least version 0.9.0... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating doc/Makefile
config.status: creating config.h
config.status: executing depfiles commands
===========================================================================
=======================<phase: build          >============================
===>  Building for phyml-3.3.20170530,1
/nxb-bin/usr/bin/make  all-recursive
Making all in src
/nxb-bin/usr/bin/cc  -I. -I..      -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c
cc: error: the clang compiler does not support '-march=native'
*** Error code 1

Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20170530/src
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20170530
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20170530
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/phyml



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