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Date:      Sat, 5 Jun 2021 18:53:15 GMT
From:      Yuri Victorovich <yuri@FreeBSD.org>
To:        ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org
Subject:   git: 8b8c1272ea64 - main - biology/jalview: Broken on 11
Message-ID:  <202106051853.155IrFS5095103@gitrepo.freebsd.org>

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The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=8b8c1272ea64f9db05d8b5cfed709881429df479

commit 8b8c1272ea64f9db05d8b5cfed709881429df479
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2021-06-05 17:43:00 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2021-06-05 18:53:07 +0000

    biology/jalview: Broken on 11
    
    Also fix number of lines in pkg-descr, and replace space with tab.
    
    Reported by:    fallout
---
 biology/jalview/Makefile  | 4 +++-
 biology/jalview/pkg-descr | 3 ---
 2 files changed, 3 insertions(+), 4 deletions(-)

diff --git a/biology/jalview/Makefile b/biology/jalview/Makefile
index e9159ecb079b..67bee6fe6514 100644
--- a/biology/jalview/Makefile
+++ b/biology/jalview/Makefile
@@ -14,6 +14,8 @@ COMMENT=	Viewer and editor for multiple sequence alignments
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
+BROKEN_FreeBSD_11=	gradle daemon systematically fails on 11: The message received from the daemon indicates that the daemon has disappeared.
+
 BUILD_DEPENDS=	gradle:devel/gradle
 
 USE_JAVA=	yes
@@ -38,7 +40,7 @@ NO_ARCH=	yes
 
 DEV_UPDATE_MODE=	no
 
-DEPS_CACHE_DIR= ${WRKDIR}
+DEPS_CACHE_DIR=		${WRKDIR}
 
 .if (${DEV_UPDATE_MODE} == "yes")
 post-build:
diff --git a/biology/jalview/pkg-descr b/biology/jalview/pkg-descr
index 4fae9fde95ba..f8f1378b879d 100644
--- a/biology/jalview/pkg-descr
+++ b/biology/jalview/pkg-descr
@@ -19,7 +19,4 @@ o Sequence feature retrieval and display on the alignment.
 o Print your alignment with colours and annotations.
 o Output alignments as HTML pages, images (PNG) or postscript (EPS).
 
-If you use Jalview in your work, please quote this publication. Clamp, M., et
-al. (2004), The Jalview Java Alignment Editor. Bioinformatics, 12, 426-7
-
 WWW: https://www.jalview.org



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